Variant report

Variant	rs7987182
Chromosome Location	chr13:37853033-37853034
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17055260	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055273	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055292	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055294	1.00[AMR][1000 genomes]
rs17055296	1.00[AMR][1000 genomes]
rs17055299	1.00[AMR][1000 genomes]
rs7319280	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7320141	0.95[AFR][1000 genomes]
rs7325404	0.91[AFR][1000 genomes]
rs7327632	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7328470	0.93[AFR][1000 genomes]
rs7330462	1.00[AMR][1000 genomes]
rs7331711	0.91[AFR][1000 genomes]
rs7334043	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7337146	1.00[AMR][1000 genomes]
rs7985127	0.93[AFR][1000 genomes]
rs7986223	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv471128	chr13:37838294-37880725	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv976224	chr13:37849849-37867170	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37852200-37860200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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