Variant report

Variant	rs17055897
Chromosome Location	chr6:128797729-128797730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128796277..128798062-chr6:128801450..128803253,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10485163	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196432	1.00[ASN][1000 genomes]
rs17055911	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17459522	1.00[ASN][1000 genomes]
rs1891149	1.00[ASN][1000 genomes]
rs1935129	1.00[ASN][1000 genomes]
rs6569528	1.00[ASN][1000 genomes]
rs6937769	1.00[ASN][1000 genomes]
rs9491952	1.00[ASN][1000 genomes]
rs9491954	1.00[ASN][1000 genomes]
rs9491955	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128787600-128799200	Weak transcription	HepG2	liver
2	chr6:128788000-128799000	Weak transcription	Liver	Liver
3	chr6:128791200-128800000	Weak transcription	Aorta	Aorta
4	chr6:128793000-128799400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:128793400-128799000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:128793400-128799400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:128793400-128803800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:128793600-128799000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:128794400-128798200	Weak transcription	Brain Angular Gyrus	brain
10	chr6:128794400-128799200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:128795200-128797800	Enhancers	NHEK	skin
12	chr6:128795400-128799000	Weak transcription	Right Ventricle	heart
13	chr6:128795400-128799200	Enhancers	Brain Substantia Nigra	brain
14	chr6:128795400-128811600	Weak transcription	HSMMtube	muscle
15	chr6:128795600-128799200	Enhancers	NHDF-Ad	bronchial
16	chr6:128795600-128801600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr6:128795800-128799400	Weak transcription	A549	lung
18	chr6:128796000-128799000	Weak transcription	Brain Anterior Caudate	brain
19	chr6:128796000-128799400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:128796000-128803800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:128796000-128811400	Weak transcription	HSMM	muscle
22	chr6:128796200-128799200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:128796200-128801000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:128796400-128799200	Weak transcription	Primary T cells from cord blood	blood
25	chr6:128796400-128799400	Weak transcription	Gastric	stomach
26	chr6:128796400-128799400	Weak transcription	Pancreas	Pancrea
27	chr6:128796400-128799400	Weak transcription	Small Intestine	intestine
28	chr6:128796400-128799400	Weak transcription	Osteobl	bone
29	chr6:128796600-128799400	Weak transcription	Left Ventricle	heart
30	chr6:128796600-128803600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:128796800-128799000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:128796800-128799200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:128796800-128799200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:128796800-128799600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr6:128796800-128803400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr6:128797000-128797800	Weak transcription	Brain Hippocampus Middle	brain
37	chr6:128797000-128799000	Weak transcription	Stomach Mucosa	stomach
38	chr6:128797000-128799200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr6:128797000-128799400	Weak transcription	Psoas Muscle	Psoas
40	chr6:128797200-128799200	Weak transcription	Fetal Intestine Large	intestine
41	chr6:128797200-128811600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr6:128797400-128798600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr6:128797400-128799000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:128797400-128799200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:128797400-128799400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr6:128797400-128799400	Weak transcription	Stomach Smooth Muscle	stomach
47	chr6:128797400-128799400	Weak transcription	HMEC	breast
48	chr6:128797400-128799400	Weak transcription	NHLF	lung
49	chr6:128797400-128800000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:128797400-128804800	Weak transcription	Fetal Heart	heart

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