Variant report

Variant	rs6937769
Chromosome Location	chr6:128798981-128798982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128798925..128800858-chr6:128805420..128807287,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10485163	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs13196432	0.89[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341598	0.88[EUR][1000 genomes]
rs1417895	1.00[CHD][hapmap]
rs17055897	1.00[ASN][1000 genomes]
rs17055911	1.00[ASN][1000 genomes]
rs17459522	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs1891149	1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935129	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360647	0.81[EUR][1000 genomes]
rs28705340	0.81[EUR][1000 genomes]
rs34478800	0.88[EUR][1000 genomes]
rs34931647	0.83[EUR][1000 genomes]
rs6569528	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375570	1.00[CHD][hapmap]
rs9482890	0.83[EUR][1000 genomes]
rs9491952	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9491954	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9491955	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9491958	0.88[EUR][1000 genomes]
rs9491975	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128787600-128799200	Weak transcription	HepG2	liver
2	chr6:128788000-128799000	Weak transcription	Liver	Liver
3	chr6:128791200-128800000	Weak transcription	Aorta	Aorta
4	chr6:128793000-128799400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:128793400-128799000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:128793400-128799400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:128793400-128803800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:128793600-128799000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:128794400-128799200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:128795400-128799000	Weak transcription	Right Ventricle	heart
11	chr6:128795400-128799200	Enhancers	Brain Substantia Nigra	brain
12	chr6:128795400-128811600	Weak transcription	HSMMtube	muscle
13	chr6:128795600-128799200	Enhancers	NHDF-Ad	bronchial
14	chr6:128795600-128801600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:128795800-128799400	Weak transcription	A549	lung
16	chr6:128796000-128799000	Weak transcription	Brain Anterior Caudate	brain
17	chr6:128796000-128799400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:128796000-128803800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:128796000-128811400	Weak transcription	HSMM	muscle
20	chr6:128796200-128799200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:128796200-128801000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:128796400-128799200	Weak transcription	Primary T cells from cord blood	blood
23	chr6:128796400-128799400	Weak transcription	Gastric	stomach
24	chr6:128796400-128799400	Weak transcription	Pancreas	Pancrea
25	chr6:128796400-128799400	Weak transcription	Small Intestine	intestine
26	chr6:128796400-128799400	Weak transcription	Osteobl	bone
27	chr6:128796600-128799400	Weak transcription	Left Ventricle	heart
28	chr6:128796600-128803600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:128796800-128799000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:128796800-128799200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:128796800-128799200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:128796800-128799600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr6:128796800-128803400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr6:128797000-128799000	Weak transcription	Stomach Mucosa	stomach
35	chr6:128797000-128799200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr6:128797000-128799400	Weak transcription	Psoas Muscle	Psoas
37	chr6:128797200-128799200	Weak transcription	Fetal Intestine Large	intestine
38	chr6:128797200-128811600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr6:128797400-128799000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:128797400-128799200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:128797400-128799400	Weak transcription	Rectal Smooth Muscle	rectum
42	chr6:128797400-128799400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr6:128797400-128799400	Weak transcription	HMEC	breast
44	chr6:128797400-128799400	Weak transcription	NHLF	lung
45	chr6:128797400-128800000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:128797400-128804800	Weak transcription	Fetal Heart	heart
47	chr6:128797400-128808200	Weak transcription	NH-A	brain
48	chr6:128797400-128822000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:128797600-128799000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:128797800-128799400	Enhancers	Brain Hippocampus Middle	brain

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