Variant report

Variant	rs9375570
Chromosome Location	chr6:128843811-128843812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:128669634..128671989-chr6:128842689..128844220,2	MCF-7	breast:
2	chr6:128666022..128668619-chr6:128842327..128844085,2	MCF-7	breast:
3	chr6:128843117..128845172-chr6:128863675..128865893,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10485163	1.00[CHD][hapmap]
rs1417895	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1417896	1.00[CHB][hapmap]
rs17055938	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs17459522	1.00[CHD][hapmap]
rs1891149	1.00[CHD][hapmap]
rs1935129	1.00[CHD][hapmap]
rs60719752	0.87[ASN][1000 genomes]
rs6569528	1.00[CHD][hapmap]
rs6569535	1.00[CHB][hapmap]
rs6569536	1.00[CHB][hapmap]
rs6920943	1.00[CHB][hapmap]
rs6923822	1.00[CHB][hapmap]
rs6935611	1.00[CHB][hapmap]
rs6937769	1.00[CHD][hapmap]
rs7356823	1.00[CHB][hapmap]
rs73772047	1.00[ASN][1000 genomes]
rs7751265	1.00[CHB][hapmap]
rs9321121	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9375572	1.00[CHB][hapmap]
rs9385464	1.00[CHB][hapmap]
rs9388638	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9388645	1.00[CHB][hapmap]
rs9388646	1.00[CHB][hapmap]
rs9402057	1.00[CHB][hapmap]
rs947358	0.87[ASN][1000 genomes]
rs9491952	1.00[CHD][hapmap]
rs9491999	1.00[CHB][hapmap]
rs9492001	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2758078	chr6:128842192-128844831	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv2759468	chr6:128842192-128844831	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128842400-128846200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:128842600-128845400	Weak transcription	Pancreas	Pancrea
3	chr6:128842600-128848800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:128842800-128844000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:128842800-128844600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:128842800-128845600	Weak transcription	Fetal Heart	heart
7	chr6:128842800-128845800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:128842800-128846200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:128842800-128846200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:128842800-128846400	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:128842800-128846400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:128842800-128846400	Weak transcription	Brain Substantia Nigra	brain
13	chr6:128842800-128846600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:128842800-128847000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:128842800-128853800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:128843000-128845800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:128843000-128846400	Weak transcription	Fetal Brain Male	brain
18	chr6:128843000-128846400	Weak transcription	Fetal Brain Female	brain
19	chr6:128843200-128845600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:128843400-128846400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:128843800-128845600	Weak transcription	HepG2	liver

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