Variant report

Variant	rs6935611
Chromosome Location	chr6:128871482-128871483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128718526..128720512-chr6:128870478..128872777,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152894	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10085247	0.91[EUR][1000 genomes]
rs10085248	0.91[EUR][1000 genomes]
rs10872332	0.87[ASN][1000 genomes]
rs11963575	0.86[EUR][1000 genomes]
rs11969975	0.87[ASN][1000 genomes]
rs12176375	0.87[ASN][1000 genomes]
rs12526667	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs13209380	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1341588	1.00[ASN][1000 genomes]
rs13437323	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs1361595	0.89[EUR][1000 genomes]
rs1417894	0.87[ASN][1000 genomes]
rs1417895	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1417896	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17055938	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs17055952	0.91[EUR][1000 genomes]
rs2326702	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs62426794	0.86[EUR][1000 genomes]
rs62426851	0.85[EUR][1000 genomes]
rs6569533	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569535	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6569536	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6916193	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919106	0.87[ASN][1000 genomes]
rs6920943	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923822	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs6924111	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs717617	0.88[CEU][hapmap]
rs7356823	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7356912	0.91[EUR][1000 genomes]
rs7739600	0.84[EUR][1000 genomes]
rs7745291	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748742	0.88[EUR][1000 genomes]
rs7751265	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7752487	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7754729	1.00[ASN][1000 genomes]
rs7760330	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765212	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7771701	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs7773021	0.87[ASN][1000 genomes]
rs9321121	1.00[CHB][hapmap]
rs9372893	0.87[ASN][1000 genomes]
rs9372894	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375570	1.00[CHB][hapmap]
rs9375572	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs9375575	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375577	0.87[ASN][1000 genomes]
rs9375578	1.00[ASN][1000 genomes]
rs9375579	0.87[ASN][1000 genomes]
rs9385464	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs9388638	1.00[CHB][hapmap]
rs9388639	0.87[ASN][1000 genomes]
rs9388640	0.87[ASN][1000 genomes]
rs9388645	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs9388646	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs9388647	1.00[ASN][1000 genomes]
rs9388648	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9388649	1.00[ASN][1000 genomes]
rs9388650	1.00[ASN][1000 genomes]
rs9388651	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388652	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388654	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398873	0.87[ASN][1000 genomes]
rs9398876	0.87[ASN][1000 genomes]
rs9402051	0.87[ASN][1000 genomes]
rs9402052	0.87[ASN][1000 genomes]
rs9402054	0.87[ASN][1000 genomes]
rs9402055	1.00[ASN][1000 genomes]
rs9402056	0.87[ASN][1000 genomes]
rs9402057	1.00[CHB][hapmap]
rs947358	0.82[AMR][1000 genomes]
rs9482904	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs9491990	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9491997	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9491999	0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492001	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492003	1.00[ASN][1000 genomes]
rs9492013	0.95[EUR][1000 genomes]
rs9492014	0.93[EUR][1000 genomes]
rs9492020	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs9492021	0.85[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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