Variant report

Variant	rs9491990
Chromosome Location	chr6:128855374-128855375
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10085247	0.98[EUR][1000 genomes]
rs10085248	0.98[EUR][1000 genomes]
rs11963575	0.91[EUR][1000 genomes]
rs12526667	0.91[EUR][1000 genomes]
rs13209380	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1341588	0.89[ASN][1000 genomes]
rs13437323	0.83[EUR][1000 genomes]
rs1361595	0.96[EUR][1000 genomes]
rs1417896	0.89[ASN][1000 genomes]
rs17055952	0.98[EUR][1000 genomes]
rs2326702	0.84[EUR][1000 genomes]
rs62426794	0.93[EUR][1000 genomes]
rs62426851	0.81[EUR][1000 genomes]
rs6569533	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6569535	0.89[ASN][1000 genomes]
rs6569536	0.89[ASN][1000 genomes]
rs6916193	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6920943	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6923822	0.85[EUR][1000 genomes]
rs6924111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6935611	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7356823	0.89[ASN][1000 genomes]
rs7356912	0.98[EUR][1000 genomes]
rs7745291	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7748742	0.83[EUR][1000 genomes]
rs7751265	0.89[ASN][1000 genomes]
rs7752487	0.90[EUR][1000 genomes]
rs7754729	0.89[ASN][1000 genomes]
rs7760330	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7765212	0.89[EUR][1000 genomes]
rs7771701	0.82[EUR][1000 genomes]
rs9372894	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9375575	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9375578	0.89[ASN][1000 genomes]
rs9388647	0.89[ASN][1000 genomes]
rs9388648	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9388649	0.89[ASN][1000 genomes]
rs9388650	0.89[ASN][1000 genomes]
rs9388651	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9388652	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9388654	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9402055	0.89[ASN][1000 genomes]
rs947358	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9482904	0.86[EUR][1000 genomes]
rs9491997	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9491999	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9492001	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9492003	0.89[ASN][1000 genomes]
rs9492013	0.90[EUR][1000 genomes]
rs9492014	0.88[EUR][1000 genomes]
rs9492020	0.82[EUR][1000 genomes]
rs9492021	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128844000-128859200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:128854400-128858800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:128854400-128858800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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