Variant report

Variant	rs9321121
Chromosome Location	chr6:128834333-128834334
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128834237..128835841-chr6:128918392..128920731,2	MCF-7	breast:
2	chr6:128834236..128836341-chr6:128977205..128979332,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1417895	1.00[CHB][hapmap]
rs1417896	1.00[CHB][hapmap]
rs17055938	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs60719752	0.87[ASN][1000 genomes]
rs6569535	1.00[CHB][hapmap]
rs6569536	1.00[CHB][hapmap]
rs6920943	1.00[CHB][hapmap]
rs6923822	1.00[CHB][hapmap]
rs6935611	1.00[CHB][hapmap]
rs7356823	1.00[CHB][hapmap]
rs73772047	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7751265	1.00[CHB][hapmap]
rs9375570	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9375572	1.00[CHB][hapmap]
rs9385464	1.00[CHB][hapmap]
rs9388638	1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9388645	1.00[CHB][hapmap]
rs9388646	1.00[CHB][hapmap]
rs9402057	1.00[CHB][hapmap]
rs947358	0.87[ASN][1000 genomes]
rs9491999	1.00[CHB][hapmap]
rs9492001	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128817200-128839800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:128817200-128839800	Weak transcription	Aorta	Aorta
3	chr6:128821600-128836800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:128825800-128840000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:128829000-128834800	Weak transcription	Fetal Stomach	stomach
6	chr6:128829000-128836400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:128829400-128836800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:128829400-128836800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:128829400-128837000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:128829400-128837400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:128829400-128839400	Weak transcription	Colonic Mucosa	Colon
12	chr6:128829400-128839600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:128829800-128837400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:128830000-128839600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:128830400-128836800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:128830400-128837400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:128831200-128835200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:128831400-128834400	Enhancers	HUVEC	blood vessel
19	chr6:128831400-128840000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:128831600-128834600	Weak transcription	HSMMtube	muscle
21	chr6:128831600-128834800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:128831600-128839800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:128832200-128834400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:128832200-128839400	Enhancers	Liver	Liver
25	chr6:128832600-128836600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:128832600-128839600	Weak transcription	Gastric	stomach
27	chr6:128832800-128834400	Weak transcription	Left Ventricle	heart
28	chr6:128832800-128834400	Weak transcription	Pancreas	Pancrea
29	chr6:128832800-128834400	Weak transcription	Psoas Muscle	Psoas
30	chr6:128832800-128834800	Weak transcription	Ovary	ovary
31	chr6:128832800-128834800	Weak transcription	Stomach Mucosa	stomach
32	chr6:128832800-128835000	Weak transcription	Small Intestine	intestine
33	chr6:128832800-128836800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:128832800-128838200	Weak transcription	Right Atrium	heart
35	chr6:128832800-128839600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr6:128832800-128839800	Weak transcription	Right Ventricle	heart
37	chr6:128833000-128834800	Weak transcription	Brain Anterior Caudate	brain
38	chr6:128833000-128836600	Weak transcription	Colon Smooth Muscle	Colon
39	chr6:128833000-128836600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:128833200-128834800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr6:128833200-128835800	Weak transcription	Fetal Lung	lung
42	chr6:128833200-128836800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:128833200-128837400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr6:128833200-128837600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr6:128833400-128834800	Weak transcription	HSMM	muscle
46	chr6:128833400-128835200	Enhancers	NHEK	skin
47	chr6:128833400-128836800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr6:128833400-128837200	Enhancers	Brain Substantia Nigra	brain
49	chr6:128833600-128834400	Enhancers	NHLF	lung
50	chr6:128833800-128834800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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