Variant report

Variant	rs1705659
Chromosome Location	chr14:84359826-84359827
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10136995	1.00[ASN][1000 genomes]
rs10146565	1.00[ASN][1000 genomes]
rs1698249	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1698251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1705643	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1705646	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1705649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1705653	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17119210	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1756279	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28376590	1.00[ASN][1000 genomes]
rs28602388	1.00[ASN][1000 genomes]
rs7150108	1.00[ASN][1000 genomes]
rs7156288	1.00[ASN][1000 genomes]
rs8010850	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431019	chr14:84303525-84365447	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv902159	chr14:84336944-84447356	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84354400-84362600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:84359400-84363200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr14:84359600-84360600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr14:84359600-84360800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr14:84359600-84361400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr14:84359600-84361400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr14:84359600-84362800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr14:84359600-84363000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr14:84359800-84361000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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