Variant report

Variant	rs17058286
Chromosome Location	chr4:173240432-173240433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1955282	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1955283	0.96[CEU][hapmap];0.91[JPT][hapmap]
rs2654777	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2654783	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2654786	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2661805	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs333383	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs333384	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs333395	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs333415	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs922973	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1025193	chr4:173145426-173267314	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537360	chr4:173145426-173267314	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173240200-173240600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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