Variant report

Variant	rs333384
Chromosome Location	chr4:173245389-173245390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1355009	0.84[CEU][hapmap]
rs17058286	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs17058323	0.85[CEU][hapmap];0.94[YRI][hapmap]
rs170776	0.85[CEU][hapmap]
rs1955282	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap]
rs1955283	0.90[JPT][hapmap]
rs2332482	0.84[ASW][hapmap];0.85[CEU][hapmap];0.94[YRI][hapmap]
rs2654777	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2654783	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2654786	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2661805	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs333377	0.84[CEU][hapmap];0.93[YRI][hapmap]
rs333378	0.85[CEU][hapmap]
rs333379	0.84[CEU][hapmap];0.94[YRI][hapmap]
rs333383	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs333395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs333400	0.84[ASW][hapmap];0.85[CEU][hapmap];0.93[YRI][hapmap]
rs333415	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs335987	0.88[YRI][hapmap]
rs335989	0.84[CEU][hapmap]
rs335991	0.85[CEU][hapmap];0.94[YRI][hapmap]
rs335993	0.84[ASW][hapmap];0.85[CEU][hapmap];0.94[YRI][hapmap]
rs335995	0.85[CEU][hapmap];0.94[YRI][hapmap]
rs335998	0.84[ASW][hapmap];0.94[YRI][hapmap]
rs336000	0.84[ASW][hapmap];0.94[YRI][hapmap]
rs7677902	0.85[CEU][hapmap]
rs922973	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1025193	chr4:173145426-173267314	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537360	chr4:173145426-173267314	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links