Variant report

Variant	rs333377
Chromosome Location	chr4:173274633-173274634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10004745	0.82[CEU][hapmap]
rs10008531	0.82[CEU][hapmap]
rs10029297	0.82[CEU][hapmap]
rs10032609	0.91[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap]
rs11132940	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11132944	0.82[CEU][hapmap]
rs11931983	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12510279	0.80[CEU][hapmap];0.84[CHB][hapmap]
rs12512348	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13144858	0.82[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1355009	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap]
rs1396222	0.91[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap]
rs1496710	0.82[CEU][hapmap]
rs1508257	0.91[CEU][hapmap];0.91[JPT][hapmap]
rs1508258	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs163185	0.82[CEU][hapmap]
rs17058323	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17058366	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs170776	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1960805	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2332482	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs333374	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333375	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs333378	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333383	0.84[CEU][hapmap];0.83[YRI][hapmap]
rs333384	0.84[CEU][hapmap];0.93[YRI][hapmap]
rs333395	0.84[CEU][hapmap]
rs333396	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs333397	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333400	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333401	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333402	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333403	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333404	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333405	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333406	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs333407	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333415	0.84[CEU][hapmap];0.93[YRI][hapmap]
rs335966	0.91[CEU][hapmap]
rs335969	0.82[CEU][hapmap]
rs335970	0.81[CEU][hapmap]
rs335972	0.87[EUR][1000 genomes]
rs335973	0.82[CEU][hapmap]
rs335975	0.82[CEU][hapmap]
rs335977	0.91[CEU][hapmap]
rs335979	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs335980	0.91[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs335981	0.91[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs335982	0.91[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs335983	0.91[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs335984	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs335985	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs335986	0.89[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap]
rs335987	0.91[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap]
rs335989	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs335991	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs335993	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs335995	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs335996	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs335997	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs335998	0.91[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs336000	0.91[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs337017	0.91[CEU][hapmap]
rs337018	0.91[CEU][hapmap]
rs337045	0.91[CEU][hapmap]
rs337050	0.82[CEU][hapmap]
rs337051	0.82[CEU][hapmap]
rs337053	0.82[CEU][hapmap]
rs337984	0.82[CEU][hapmap]
rs337985	0.81[CEU][hapmap]
rs337988	0.82[CEU][hapmap]
rs337990	0.82[CEU][hapmap]
rs337991	0.80[CEU][hapmap]
rs337992	0.82[CEU][hapmap]
rs337993	0.82[CEU][hapmap]
rs337997	0.82[CEU][hapmap]
rs338004	0.81[CEU][hapmap]
rs338033	0.82[CEU][hapmap]
rs3903474	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs455869	0.91[CEU][hapmap]
rs462761	0.91[CEU][hapmap]
rs4692650	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs4692651	0.91[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs488103	0.82[CEU][hapmap]
rs55904602	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58188334	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6553632	0.91[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs663643	0.91[CEU][hapmap]
rs6815640	0.81[CEU][hapmap]
rs6838976	0.91[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap]
rs73868995	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs744774	0.82[CEU][hapmap]
rs7666223	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs7673187	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7677902	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7691982	0.81[CEU][hapmap]
rs9993993	0.91[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173270000-173276800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:173274000-173278400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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