Variant report

Variant	rs6553632
Chromosome Location	chr4:173314766-173314767
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10004745	0.81[MEX][hapmap];0.86[TSI][hapmap]
rs10008531	0.92[CEU][hapmap]
rs10032609	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap]
rs11132940	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11931983	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12510279	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap]
rs12512348	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13144858	0.93[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.94[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1355009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1396222	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1496710	0.81[MEX][hapmap];0.86[TSI][hapmap]
rs1508257	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1508258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs163185	0.92[CEU][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap]
rs17058323	0.92[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap]
rs17058366	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs170776	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1960805	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2332482	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs333374	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs333375	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs333377	0.91[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs333378	0.92[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs333379	0.91[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs333396	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs333397	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs333400	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs333401	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs333402	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs333403	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs333404	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs333405	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs333406	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs333407	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs335966	0.84[CEU][hapmap]
rs335969	0.92[CEU][hapmap]
rs335970	0.91[CEU][hapmap]
rs335972	0.85[GIH][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs335973	0.92[CEU][hapmap]
rs335975	0.92[CEU][hapmap]
rs335977	0.84[CEU][hapmap]
rs335979	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs335980	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs335981	0.84[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs335982	0.84[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.83[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs335983	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs335984	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs335985	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs335986	0.81[CEU][hapmap];0.89[CHB][hapmap]
rs335987	0.84[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap]
rs335989	0.91[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs335991	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap]
rs335993	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs335995	0.92[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs335996	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs335997	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs335998	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap]
rs336000	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs336001	0.88[CEU][hapmap]
rs336002	0.84[CEU][hapmap]
rs336005	0.84[CEU][hapmap];0.86[TSI][hapmap]
rs336006	0.84[CEU][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap]
rs336014	0.84[CEU][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap]
rs336016	0.84[CEU][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap]
rs336017	0.84[CEU][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap]
rs336018	0.84[CEU][hapmap]
rs336019	0.84[CEU][hapmap]
rs336021	0.84[CEU][hapmap]
rs336022	0.84[CEU][hapmap]
rs337017	0.84[CEU][hapmap]
rs337018	0.84[CEU][hapmap]
rs337045	0.84[CEU][hapmap];1.00[TSI][hapmap]
rs337050	0.81[MEX][hapmap];0.86[TSI][hapmap]
rs337984	0.86[TSI][hapmap]
rs337992	0.86[TSI][hapmap]
rs337999	0.84[CEU][hapmap]
rs3903474	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs455869	0.84[CEU][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap]
rs462761	0.84[CEU][hapmap]
rs466124	0.84[CEU][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap]
rs4692650	0.83[CHB][hapmap]
rs4692651	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55904602	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58188334	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs663643	0.84[CEU][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap]
rs6838976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs6844483	0.85[CEU][hapmap]
rs720635	0.84[CEU][hapmap]
rs73868995	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7666223	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7673187	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7677902	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9993993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv880416	chr4:173287422-173388217	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1031327	chr4:173306405-173465248	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173314400-173314800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:173314600-173314800	Enhancers	Hela-S3	cervix

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