Variant report

Variant	rs720635
Chromosome Location	chr4:173482960-173482961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10004745	0.92[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap]
rs10008531	0.92[CEU][hapmap]
rs10019934	0.86[CHB][hapmap];0.92[CHD][hapmap]
rs10029297	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs10032609	0.84[CEU][hapmap]
rs10434403	0.86[CHB][hapmap]
rs11132944	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs12233778	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12498714	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs12506997	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12510279	1.00[CEU][hapmap]
rs13144858	0.92[CEU][hapmap]
rs13435174	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs1355009	0.82[CEU][hapmap]
rs1455126	0.84[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.90[EUR][1000 genomes]
rs1496710	0.92[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap]
rs1508257	0.84[CEU][hapmap]
rs163185	0.92[CEU][hapmap];0.80[MEX][hapmap]
rs1869684	0.92[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1874504	0.92[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1874505	0.90[CHB][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1908778	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1908779	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1995068	0.86[CHB][hapmap];0.92[CHD][hapmap]
rs2047342	0.86[CHB][hapmap];0.92[CHD][hapmap]
rs2332519	0.92[CEU][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes]
rs2332535	0.86[CHB][hapmap]
rs2877713	0.85[CHB][hapmap]
rs3104246	0.90[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs335966	0.84[CEU][hapmap]
rs335969	0.92[CEU][hapmap]
rs335970	0.91[CEU][hapmap]
rs335972	0.80[MEX][hapmap]
rs335973	0.92[CEU][hapmap]
rs335975	0.92[CEU][hapmap]
rs335977	0.84[CEU][hapmap]
rs335980	0.84[CEU][hapmap]
rs335981	0.84[CEU][hapmap]
rs335982	0.84[CEU][hapmap];0.80[MEX][hapmap]
rs335983	0.84[CEU][hapmap]
rs335986	0.90[CEU][hapmap]
rs335987	0.84[CEU][hapmap]
rs335989	0.82[CEU][hapmap]
rs335991	0.80[MEX][hapmap]
rs335993	0.80[MEX][hapmap]
rs335998	0.84[CEU][hapmap];0.80[MEX][hapmap]
rs336000	0.84[CEU][hapmap];0.80[MEX][hapmap]
rs336001	1.00[CEU][hapmap]
rs336002	1.00[CEU][hapmap]
rs336005	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs336006	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap]
rs336014	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap]
rs336016	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap]
rs336017	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap]
rs336018	1.00[CEU][hapmap]
rs336019	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs336021	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs336022	1.00[CEU][hapmap]
rs337017	0.84[CEU][hapmap]
rs337018	0.84[CEU][hapmap]
rs337045	0.84[CEU][hapmap]
rs337050	0.92[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap]
rs337051	0.92[CEU][hapmap];0.94[CHB][hapmap]
rs337053	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs337984	0.92[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap]
rs337985	0.91[CEU][hapmap];0.95[CHB][hapmap]
rs337988	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs337990	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs337991	0.81[CEU][hapmap];0.95[CHB][hapmap]
rs337992	0.92[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap]
rs337993	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs337995	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs337997	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs337999	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs338004	0.91[CEU][hapmap];0.95[CHB][hapmap]
rs338033	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs338035	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4247205	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4247206	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4247207	0.89[CHB][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4247208	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4540001	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs455869	0.84[CEU][hapmap];0.80[MEX][hapmap]
rs462761	0.84[CEU][hapmap]
rs466124	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap]
rs4692651	0.84[CEU][hapmap]
rs4692652	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs488103	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs6553632	0.84[CEU][hapmap]
rs663643	0.84[CEU][hapmap];0.80[MEX][hapmap]
rs6815640	0.91[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs6816068	0.86[CHB][hapmap]
rs6819214	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6821570	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs6844055	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6844483	0.92[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs744774	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs744775	0.91[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs7670427	0.84[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs7677902	0.80[MEX][hapmap]
rs7681404	0.90[EUR][1000 genomes]
rs7691982	0.82[CEU][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs7699264	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7700003	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs961306	0.92[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9993993	0.84[CEU][hapmap]
rs9995169	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173482800-173483200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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