Variant report

Variant	rs1995068
Chromosome Location	chr4:173409387-173409388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:173404168..173405809-chr4:173407513..173409648,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10004745	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10019934	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10024431	0.88[CEU][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap]
rs10029297	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs10434403	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap]
rs11132944	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11132945	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11132946	0.84[ASN][1000 genomes]
rs12506997	0.86[CHB][hapmap];0.92[CHD][hapmap]
rs12644293	0.88[LWK][hapmap];0.96[YRI][hapmap]
rs13116631	0.88[CEU][hapmap];0.85[GIH][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap]
rs13435174	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1455126	0.81[CHB][hapmap]
rs1496710	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs163185	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs2047342	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs2332535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs28726202	0.94[EUR][1000 genomes]
rs2877713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3104246	0.90[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs335970	0.81[JPT][hapmap]
rs335972	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs335973	0.88[JPT][hapmap]
rs335975	0.81[JPT][hapmap]
rs336002	0.81[JPT][hapmap]
rs336003	0.88[JPT][hapmap]
rs336005	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap]
rs336006	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap]
rs336014	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap]
rs336016	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap]
rs336017	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap]
rs336019	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs336021	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs337050	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs337051	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs337053	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs337984	0.90[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap]
rs337985	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs337986	0.95[ASN][1000 genomes]
rs337988	0.91[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs337989	0.84[ASN][1000 genomes]
rs337990	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs337991	0.90[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs337992	0.90[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs337993	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs337995	0.81[JPT][hapmap]
rs337997	0.86[CHB][hapmap];0.92[CHD][hapmap]
rs337999	0.86[CHB][hapmap];0.92[CHD][hapmap]
rs338004	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs338007	0.95[ASN][1000 genomes]
rs338021	0.96[CEU][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap]
rs338027	0.84[ASN][1000 genomes]
rs338028	0.84[ASN][1000 genomes]
rs338029	0.81[ASN][1000 genomes]
rs338030	0.82[ASN][1000 genomes]
rs466124	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs488103	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs6553634	0.81[LWK][hapmap];0.96[YRI][hapmap]
rs6815640	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs6816068	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6819214	0.86[CHB][hapmap]
rs6821570	0.95[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs720635	0.86[CHB][hapmap];0.92[CHD][hapmap]
rs744774	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs744775	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs7699264	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1031327	chr4:173306405-173465248	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv508333	chr4:173369686-173447675	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv4607	chr4:173406293-173457588	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv870205	chr4:173409062-173436383	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv596210	chr4:173409387-173431679	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173403600-173410200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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