Variant report

Variant	rs6821570
Chromosome Location	chr4:173385570-173385571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10004745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10019934	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10024431	0.84[CEU][hapmap];0.83[JPT][hapmap]
rs10029297	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10434403	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs11132944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11132945	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11132946	0.99[ASN][1000 genomes]
rs12506997	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs13116631	0.83[CEU][hapmap]
rs13435174	0.96[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs1455126	0.81[CHB][hapmap]
rs1496710	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs163185	0.87[JPT][hapmap]
rs1874505	0.84[CHB][hapmap]
rs1995068	0.95[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2047342	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs2332535	0.96[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs28726202	0.84[EUR][1000 genomes]
rs2877713	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs3104246	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs335969	0.86[JPT][hapmap]
rs335970	0.87[JPT][hapmap]
rs335973	0.83[JPT][hapmap]
rs335975	0.87[JPT][hapmap]
rs336002	0.88[JPT][hapmap]
rs336003	0.82[JPT][hapmap]
rs336005	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs336006	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs336014	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs336016	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs336017	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs336019	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs336021	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs337050	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs337051	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs337053	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs337984	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs337985	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs337986	0.87[ASN][1000 genomes]
rs337988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs337989	0.99[ASN][1000 genomes]
rs337990	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs337991	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs337992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs337993	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs337995	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs337997	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs337999	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs338004	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs338007	0.87[ASN][1000 genomes]
rs338021	0.96[CEU][hapmap];0.81[CHB][hapmap]
rs338027	0.99[ASN][1000 genomes]
rs338028	0.99[ASN][1000 genomes]
rs338029	0.96[ASN][1000 genomes]
rs338030	0.97[ASN][1000 genomes]
rs4247207	0.83[CHB][hapmap]
rs466124	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs488103	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6815640	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6816068	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs6819214	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs720635	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs744774	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs744775	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7699264	0.95[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv880416	chr4:173287422-173388217	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1031327	chr4:173306405-173465248	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv508333	chr4:173369686-173447675	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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