Variant report

Variant	rs10024431
Chromosome Location	chr4:173354354-173354355
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10004745	0.81[JPT][hapmap]
rs10008531	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10019934	0.88[CEU][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10029297	0.82[JPT][hapmap]
rs10434403	0.88[CEU][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap]
rs11132944	0.81[JPT][hapmap]
rs11132945	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12644293	0.96[YRI][hapmap]
rs13116631	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs13435174	0.84[CEU][hapmap];0.88[JPT][hapmap]
rs1496710	0.88[JPT][hapmap]
rs163185	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs1995068	0.88[CEU][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap]
rs2047342	0.88[CEU][hapmap];0.88[JPT][hapmap]
rs2332535	0.89[CEU][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap]
rs2877713	0.89[CEU][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap]
rs3104246	0.83[JPT][hapmap]
rs335966	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs335969	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs335970	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs335972	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs335973	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs335975	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs335977	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs336002	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs336003	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs336005	0.81[JPT][hapmap]
rs336006	0.81[JPT][hapmap]
rs336014	0.81[JPT][hapmap]
rs336016	0.81[JPT][hapmap]
rs336017	0.81[JPT][hapmap]
rs336019	0.83[JPT][hapmap]
rs336021	0.82[JPT][hapmap]
rs337017	0.91[CHB][hapmap]
rs337018	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs337045	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs337050	0.88[JPT][hapmap]
rs337051	0.81[JPT][hapmap]
rs337053	0.82[JPT][hapmap]
rs337984	0.81[JPT][hapmap]
rs337988	0.82[JPT][hapmap]
rs337990	0.82[JPT][hapmap]
rs337992	0.81[JPT][hapmap]
rs337993	0.83[JPT][hapmap]
rs338004	0.82[JPT][hapmap]
rs338021	0.84[CEU][hapmap]
rs455869	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs462761	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs466124	0.88[JPT][hapmap]
rs488103	0.83[JPT][hapmap]
rs6553634	0.88[YRI][hapmap]
rs663643	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs6815640	0.82[JPT][hapmap]
rs6816068	0.84[CEU][hapmap];0.88[JPT][hapmap]
rs6821570	0.84[CEU][hapmap];0.83[JPT][hapmap]
rs744774	0.88[JPT][hapmap]
rs744775	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv880416	chr4:173287422-173388217	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1031327	chr4:173306405-173465248	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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