Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10008531	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10019934	0.88[CEU][hapmap];0.85[GIH][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap]
rs10024431	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10434403	0.88[CEU][hapmap]
rs10520234	0.93[LWK][hapmap];0.95[YRI][hapmap]
rs13435174	0.84[CEU][hapmap]
rs1508259	0.95[YRI][hapmap]
rs1508260	0.90[LWK][hapmap];0.90[YRI][hapmap]
rs163185	0.91[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap]
rs1995068	0.88[CEU][hapmap];0.85[GIH][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap]
rs2047342	0.88[CEU][hapmap];0.85[GIH][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]
rs2332535	0.88[CEU][hapmap]
rs2877713	0.88[CEU][hapmap]
rs335966	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs335969	0.91[CHB][hapmap]
rs335970	0.91[CHB][hapmap]
rs335972	1.00[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs335973	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs335975	0.91[CHB][hapmap]
rs335977	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs336002	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs336003	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs337017	0.91[CHB][hapmap];0.92[JPT][hapmap]
rs337018	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs337045	0.91[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap]
rs338021	0.84[CEU][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs455869	0.91[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap]
rs462761	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs663643	0.91[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap]
rs6816068	0.84[CEU][hapmap]
rs6821570	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv880416	chr4:173287422-173388217	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1031327	chr4:173306405-173465248	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13116631	GALNTL6	cis	cerebellum	SCAN
rs13116631	WDR17	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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