Variant report

Variant	rs336001
Chromosome Location	chr4:173356891-173356892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10004745	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs10008531	1.00[CEU][hapmap]
rs10029297	0.86[CEU][hapmap]
rs10032609	0.88[CEU][hapmap]
rs11132940	0.87[EUR][1000 genomes]
rs11132944	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs11132946	0.84[EUR][1000 genomes]
rs11931983	0.91[EUR][1000 genomes]
rs12506997	0.86[CEU][hapmap]
rs12510279	1.00[CEU][hapmap]
rs12512348	0.93[EUR][1000 genomes]
rs13144858	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1355009	0.85[CEU][hapmap]
rs1396222	0.88[CEU][hapmap]
rs1496710	0.86[CEU][hapmap]
rs1508257	0.88[CEU][hapmap]
rs1508258	0.93[EUR][1000 genomes]
rs163185	1.00[CEU][hapmap]
rs17058366	0.91[EUR][1000 genomes]
rs170776	0.87[EUR][1000 genomes]
rs1869684	0.88[CEU][hapmap]
rs1874504	0.86[CEU][hapmap]
rs1960805	0.81[EUR][1000 genomes]
rs2332519	0.88[CEU][hapmap]
rs3104246	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs333374	0.87[EUR][1000 genomes]
rs333375	0.87[EUR][1000 genomes]
rs333377	0.87[EUR][1000 genomes]
rs333378	0.87[EUR][1000 genomes]
rs333379	0.87[EUR][1000 genomes]
rs333396	0.87[EUR][1000 genomes]
rs333397	0.84[EUR][1000 genomes]
rs333400	0.84[EUR][1000 genomes]
rs333401	0.84[EUR][1000 genomes]
rs333402	0.84[EUR][1000 genomes]
rs333403	0.84[EUR][1000 genomes]
rs333404	0.84[EUR][1000 genomes]
rs333405	0.84[EUR][1000 genomes]
rs333406	0.84[EUR][1000 genomes]
rs333407	0.84[EUR][1000 genomes]
rs335966	0.86[CEU][hapmap]
rs335969	1.00[CEU][hapmap]
rs335970	1.00[CEU][hapmap]
rs335972	0.86[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs335973	1.00[CEU][hapmap]
rs335975	1.00[CEU][hapmap]
rs335977	0.86[CEU][hapmap]
rs335979	0.94[EUR][1000 genomes]
rs335980	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs335981	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs335982	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs335983	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs335984	0.93[EUR][1000 genomes]
rs335985	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs335986	0.85[CEU][hapmap]
rs335987	0.86[CEU][hapmap]
rs335993	0.90[EUR][1000 genomes]
rs335995	0.91[EUR][1000 genomes]
rs335996	0.91[EUR][1000 genomes]
rs335997	0.93[EUR][1000 genomes]
rs335998	0.86[CEU][hapmap]
rs336000	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs336002	1.00[CEU][hapmap]
rs336005	1.00[CEU][hapmap]
rs336006	1.00[CEU][hapmap]
rs336014	1.00[CEU][hapmap]
rs336016	1.00[CEU][hapmap]
rs336017	1.00[CEU][hapmap]
rs336018	1.00[CEU][hapmap]
rs336019	1.00[CEU][hapmap]
rs336021	1.00[CEU][hapmap]
rs336022	1.00[CEU][hapmap]
rs337017	0.86[CEU][hapmap]
rs337018	0.86[CEU][hapmap]
rs337045	0.86[CEU][hapmap]
rs337050	0.86[CEU][hapmap]
rs337051	0.86[CEU][hapmap]
rs337053	0.86[CEU][hapmap]
rs337984	0.86[CEU][hapmap]
rs337985	0.86[CEU][hapmap]
rs337986	0.83[EUR][1000 genomes]
rs337988	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs337989	0.85[EUR][1000 genomes]
rs337990	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs337991	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs337992	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs337993	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs337995	0.85[CEU][hapmap]
rs337997	0.86[CEU][hapmap]
rs337999	1.00[CEU][hapmap]
rs338004	0.86[CEU][hapmap]
rs338007	0.82[EUR][1000 genomes]
rs338027	0.85[EUR][1000 genomes]
rs338028	0.82[EUR][1000 genomes]
rs338029	0.85[EUR][1000 genomes]
rs338030	0.85[EUR][1000 genomes]
rs338033	0.86[CEU][hapmap]
rs3903474	0.88[EUR][1000 genomes]
rs455869	0.86[CEU][hapmap]
rs462761	0.86[CEU][hapmap]
rs466124	1.00[CEU][hapmap]
rs4692651	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs488103	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs55904602	0.87[EUR][1000 genomes]
rs58188334	0.87[EUR][1000 genomes]
rs6553632	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs663643	0.86[CEU][hapmap]
rs6815640	0.85[CEU][hapmap]
rs6819214	0.86[CEU][hapmap]
rs6838976	0.88[CEU][hapmap]
rs6844055	0.86[CEU][hapmap]
rs6844483	0.88[CEU][hapmap]
rs720635	1.00[CEU][hapmap]
rs73868995	0.91[EUR][1000 genomes]
rs744774	0.86[CEU][hapmap]
rs744775	0.85[CEU][hapmap]
rs7673187	0.91[EUR][1000 genomes]
rs7677902	0.91[EUR][1000 genomes]
rs7699264	0.86[CEU][hapmap]
rs961306	0.88[CEU][hapmap]
rs9993993	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv880416	chr4:173287422-173388217	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1031327	chr4:173306405-173465248	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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