Variant report

Variant	rs6844483
Chromosome Location	chr4:173470229-173470230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10004745	0.85[CEU][hapmap]
rs10008531	0.85[CEU][hapmap]
rs10028462	0.84[YRI][hapmap]
rs10029297	0.85[CEU][hapmap]
rs10032609	0.85[CEU][hapmap]
rs11132944	0.85[CEU][hapmap]
rs12233778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12498714	0.91[CEU][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12506997	0.85[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes]
rs12510279	0.91[CEU][hapmap]
rs13144858	0.85[CEU][hapmap]
rs1355009	0.83[CEU][hapmap]
rs1396222	0.85[CEU][hapmap]
rs1455126	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496710	0.85[CEU][hapmap]
rs1508257	0.84[CEU][hapmap]
rs163185	0.85[CEU][hapmap]
rs1869684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1874504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1874505	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1908778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1908779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2332519	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3104246	0.81[CEU][hapmap]
rs335969	0.85[CEU][hapmap]
rs335970	0.84[CEU][hapmap]
rs335973	0.85[CEU][hapmap]
rs335975	0.85[CEU][hapmap]
rs335986	0.81[CEU][hapmap]
rs335989	0.83[CEU][hapmap]
rs336001	0.88[CEU][hapmap]
rs336002	0.92[CEU][hapmap]
rs336005	0.92[CEU][hapmap]
rs336006	0.92[CEU][hapmap]
rs336014	0.92[CEU][hapmap]
rs336016	0.92[CEU][hapmap]
rs336017	0.92[CEU][hapmap]
rs336018	0.92[CEU][hapmap]
rs336019	0.92[CEU][hapmap]
rs336021	0.92[CEU][hapmap]
rs336022	0.92[CEU][hapmap]
rs337050	0.85[CEU][hapmap]
rs337051	0.85[CEU][hapmap]
rs337053	0.85[CEU][hapmap]
rs337984	0.85[CEU][hapmap]
rs337985	0.84[CEU][hapmap]
rs337988	0.85[CEU][hapmap]
rs337990	0.85[CEU][hapmap]
rs337992	0.85[CEU][hapmap]
rs337993	0.85[CEU][hapmap]
rs337995	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs337997	0.85[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes]
rs337999	0.92[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs338004	0.84[CEU][hapmap];0.81[CHB][hapmap]
rs338033	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs338035	0.94[EUR][1000 genomes]
rs4247205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4247206	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4247207	0.89[CHB][hapmap];0.94[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4247208	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4540001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs466124	0.92[CEU][hapmap]
rs4692651	0.85[CEU][hapmap]
rs4692652	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs488103	0.85[CEU][hapmap]
rs6553632	0.85[CEU][hapmap]
rs6815640	0.84[CEU][hapmap]
rs6819214	0.85[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes]
rs6838976	0.85[CEU][hapmap]
rs6844055	1.00[CEU][hapmap];0.81[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs720635	0.92[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs744774	0.85[CEU][hapmap]
rs744775	0.83[CEU][hapmap]
rs7670427	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7673087	0.84[YRI][hapmap]
rs7681404	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691982	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699264	0.85[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes]
rs961306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9993993	0.85[CEU][hapmap]
rs9995169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173468800-173471400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:173468800-173472400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:173469000-173470600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:173469000-173470600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr4:173469000-173470600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:173469000-173470600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:173469000-173471600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:173469400-173470600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:173469600-173470600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr4:173469600-173478000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:173469800-173472200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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