Variant report

Variant	rs12498714
Chromosome Location	chr4:173468925-173468926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10004745	0.91[CEU][hapmap]
rs10029297	0.91[CEU][hapmap]
rs11132944	0.91[CEU][hapmap]
rs12233778	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12506997	0.91[CEU][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1455126	1.00[CEU][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496710	0.91[CEU][hapmap]
rs1869684	0.91[CEU][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1874504	0.91[CEU][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1874505	0.91[CEU][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1908778	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1908779	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2332519	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3104246	0.88[CEU][hapmap]
rs335966	0.81[CEU][hapmap]
rs335977	0.81[CEU][hapmap]
rs335980	0.81[CEU][hapmap]
rs335981	0.81[CEU][hapmap]
rs335982	0.81[CEU][hapmap]
rs335983	0.81[CEU][hapmap]
rs335986	0.89[CEU][hapmap]
rs335987	0.81[CEU][hapmap]
rs335998	0.81[CEU][hapmap]
rs336000	0.81[CEU][hapmap]
rs336002	0.82[CEU][hapmap]
rs336005	0.82[CEU][hapmap]
rs336006	0.82[CEU][hapmap]
rs336014	0.82[CEU][hapmap]
rs336016	0.82[CEU][hapmap]
rs336017	0.82[CEU][hapmap]
rs336018	0.82[CEU][hapmap]
rs336019	0.82[CEU][hapmap]
rs336021	0.82[CEU][hapmap]
rs336022	0.82[CEU][hapmap]
rs337017	0.81[CEU][hapmap]
rs337018	0.81[CEU][hapmap]
rs337045	0.81[CEU][hapmap]
rs337050	0.91[CEU][hapmap]
rs337051	0.91[CEU][hapmap]
rs337053	0.91[CEU][hapmap]
rs337984	0.91[CEU][hapmap]
rs337985	0.90[CEU][hapmap]
rs337988	0.91[CEU][hapmap]
rs337990	0.91[CEU][hapmap]
rs337992	0.91[CEU][hapmap]
rs337993	0.91[CEU][hapmap]
rs337995	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs337997	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs337999	0.82[CEU][hapmap];0.94[EUR][1000 genomes]
rs338004	0.90[CEU][hapmap]
rs338033	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs338035	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4247205	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4247206	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4247207	0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4247208	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4540001	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs455869	0.81[CEU][hapmap]
rs462761	0.81[CEU][hapmap]
rs466124	0.82[CEU][hapmap]
rs4692652	0.90[EUR][1000 genomes]
rs488103	0.91[CEU][hapmap]
rs663643	0.81[CEU][hapmap]
rs6815640	0.90[CEU][hapmap]
rs6819214	0.91[CEU][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6844055	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6844483	0.91[CEU][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs720635	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs744774	0.91[CEU][hapmap]
rs744775	0.89[CEU][hapmap]
rs7670427	1.00[CEU][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7681404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691982	1.00[CEU][hapmap];0.92[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699264	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7700003	0.80[EUR][1000 genomes]
rs961306	0.91[CEU][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9995169	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173465400-173469400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:173465600-173469000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:173465600-173469000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:173465800-173469000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:173465800-173469000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:173466200-173469000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:173468800-173471400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:173468800-173472400	Enhancers	HUES48 Cell Line	embryonic stem cell

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