Variant report

Variant	rs335985
Chromosome Location	chr4:173333923-173333924
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10004745	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs10008531	0.81[CEU][hapmap]
rs10029297	0.81[CEU][hapmap]
rs11132940	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11132944	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs11132946	0.81[EUR][1000 genomes]
rs11931983	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12506997	0.81[CEU][hapmap]
rs12510279	0.90[CEU][hapmap]
rs12512348	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13144858	0.81[CEU][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1496710	0.81[CEU][hapmap]
rs1508258	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs163185	0.81[CEU][hapmap]
rs17058323	0.81[CEU][hapmap]
rs17058366	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs170776	0.81[CEU][hapmap];0.86[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1960805	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2332482	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs333374	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs333375	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs333377	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs333378	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs333379	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs333396	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs333397	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs333400	0.81[CEU][hapmap];0.84[CHB][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs333401	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs333402	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs333403	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs333404	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs333405	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs333406	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs333407	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs335966	0.90[CEU][hapmap]
rs335969	0.81[CEU][hapmap]
rs335970	0.80[CEU][hapmap]
rs335972	0.94[EUR][1000 genomes]
rs335973	0.81[CEU][hapmap]
rs335975	0.81[CEU][hapmap]
rs335977	0.90[CEU][hapmap]
rs335979	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs335980	0.90[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs335981	0.90[CEU][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs335982	0.90[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs335983	0.90[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs335984	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs335986	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs335987	0.90[CEU][hapmap];0.84[JPT][hapmap]
rs335989	0.90[CEU][hapmap];0.86[JPT][hapmap]
rs335991	0.81[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap]
rs335993	0.81[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs335995	0.81[CEU][hapmap];0.85[JPT][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs335996	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs335997	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs335998	0.90[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap]
rs336000	0.90[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs336001	0.86[CEU][hapmap]
rs337017	0.90[CEU][hapmap]
rs337018	0.90[CEU][hapmap]
rs337045	0.90[CEU][hapmap]
rs337050	0.81[CEU][hapmap]
rs337051	0.81[CEU][hapmap]
rs337053	0.81[CEU][hapmap]
rs337984	0.81[CEU][hapmap]
rs337988	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs337989	0.82[EUR][1000 genomes]
rs337990	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs337991	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs337992	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs337993	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs337997	0.81[CEU][hapmap]
rs338004	0.80[CEU][hapmap]
rs338027	0.82[EUR][1000 genomes]
rs338029	0.82[EUR][1000 genomes]
rs338030	0.82[EUR][1000 genomes]
rs338033	0.81[CEU][hapmap]
rs3903474	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs455869	0.90[CEU][hapmap]
rs462761	0.90[CEU][hapmap]
rs4692650	0.85[JPT][hapmap]
rs4692651	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs488103	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs55904602	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58188334	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6553632	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs663643	0.90[CEU][hapmap]
rs6819214	0.81[CEU][hapmap]
rs73868995	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs744774	0.81[CEU][hapmap]
rs7673187	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7677902	0.81[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7691982	0.90[CEU][hapmap]
rs7699264	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv880416	chr4:173287422-173388217	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1031327	chr4:173306405-173465248	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173332600-173334200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:173333000-173334000	Weak transcription	Hela-S3	cervix
3	chr4:173333800-173334600	Enhancers	Placenta Amnion	Placenta Amnion

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