Variant report

Variant	rs17058602
Chromosome Location	chr4:173469721-173469722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17058382	1.00[AMR][1000 genomes]
rs17058411	1.00[AMR][1000 genomes]
rs17058714	1.00[AMR][1000 genomes]
rs2101251	1.00[AMR][1000 genomes]
rs6840904	1.00[AMR][1000 genomes]
rs7689558	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173468800-173471400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:173468800-173472400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:173469000-173470600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:173469000-173470600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr4:173469000-173470600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:173469000-173470600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:173469000-173471600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:173469200-173469800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr4:173469400-173470600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:173469600-173470600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr4:173469600-173478000	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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