Variant report

Variant	rs7689558
Chromosome Location	chr4:173437545-173437546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17058382	1.00[AMR][1000 genomes]
rs17058411	1.00[AMR][1000 genomes]
rs17058602	1.00[AMR][1000 genomes]
rs17058714	1.00[AMR][1000 genomes]
rs2101251	1.00[AMR][1000 genomes]
rs6840904	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1031327	chr4:173306405-173465248	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv508333	chr4:173369686-173447675	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv4607	chr4:173406293-173457588	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1026882	chr4:173410691-173441120	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv1016549	chr4:173411663-173441120	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv1023134	chr4:173412218-173455427	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1021404	chr4:173413885-173458833	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	nsv263	chr4:173418319-173438806	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
13	esv1838024	chr4:173422260-173441120	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
14	esv1813301	chr4:173422510-173441120	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv1811294	chr4:173423656-173439265	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
16	esv1814617	chr4:173423656-173439265	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
17	nsv596216	chr4:173425609-173438438	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
18	esv1804232	chr4:173425609-173439265	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
19	esv1805934	chr4:173425609-173439265	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
20	esv1808400	chr4:173425609-173439265	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
21	esv1809547	chr4:173427242-173437677	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173436000-173438400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:173436600-173438000	Weak transcription	Hela-S3	cervix

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