Variant report

Variant	rs17059023
Chromosome Location	chr13:39608623-39608624
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:39599530..39604283-chr13:39604707..39609132,9	K562	blood:
2	chr1:28974793..28975606-chr13:39608352..39608852,2	HCT-116	colon:
3	chr13:39608105..39609639-chr13:40260400..40262356,2	K562	blood:

Variant related genes	Relation type
ENSG00000120685	Chromatin interaction
ENSG00000270103	Chromatin interaction
ENSG00000133103	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17058950	1.00[AMR][1000 genomes]
rs17058955	1.00[AMR][1000 genomes]
rs17058957	1.00[AMR][1000 genomes]
rs17058977	1.00[AMR][1000 genomes]
rs17058982	1.00[AMR][1000 genomes]
rs17058983	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17058988	1.00[AMR][1000 genomes]
rs17059017	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17059021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17059035	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17059072	1.00[YRI][hapmap]
rs7991750	1.00[AMR][1000 genomes]
rs7993045	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2753642	chr13:39522300-39649000	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2753553	chr13:39526600-39649000	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39588400-39608800	Weak transcription	Stomach Mucosa	stomach
2	chr13:39588600-39610400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:39589200-39609400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr13:39598000-39609600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr13:39598200-39608800	Weak transcription	Fetal Heart	heart
6	chr13:39598400-39609600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr13:39599800-39608800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:39599800-39609000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:39599800-39609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr13:39599800-39609400	Weak transcription	Fetal Stomach	stomach
11	chr13:39599800-39609400	Weak transcription	Gastric	stomach
12	chr13:39599800-39609400	Weak transcription	Right Ventricle	heart
13	chr13:39599800-39610400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:39599800-39610600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr13:39599800-39611200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr13:39600600-39610600	Weak transcription	Lung	lung
17	chr13:39601000-39608800	Weak transcription	Ovary	ovary
18	chr13:39602200-39608800	Weak transcription	HMEC	breast
19	chr13:39602400-39608800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr13:39602400-39609200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr13:39602400-39609200	Weak transcription	HSMMtube	muscle
22	chr13:39602400-39609400	Weak transcription	NH-A	brain
23	chr13:39602600-39608800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr13:39602600-39608800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr13:39602600-39608800	Weak transcription	NHDF-Ad	bronchial
26	chr13:39603000-39608800	Weak transcription	Adipose Nuclei	Adipose
27	chr13:39603000-39608800	Weak transcription	Liver	Liver
28	chr13:39603000-39608800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr13:39603000-39609000	Weak transcription	Fetal Kidney	kidney
30	chr13:39603000-39609400	Weak transcription	Osteobl	bone
31	chr13:39603200-39608800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr13:39603200-39609400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr13:39603400-39608800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr13:39605000-39608800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr13:39605400-39609400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr13:39605400-39609400	Weak transcription	Fetal Muscle Leg	muscle
37	chr13:39605600-39609400	Weak transcription	Placenta	Placenta
38	chr13:39606000-39609400	Weak transcription	Fetal Muscle Trunk	muscle
39	chr13:39606400-39609400	Weak transcription	HSMM	muscle
40	chr13:39606600-39608800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr13:39606600-39608800	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr13:39606600-39609200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr13:39606600-39609400	Weak transcription	Psoas Muscle	Psoas
44	chr13:39606800-39608800	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr13:39607200-39610000	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr13:39607400-39609400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr13:39607400-39609400	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr13:39607600-39608800	Enhancers	Fetal Brain Female	brain
49	chr13:39607600-39609600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr13:39607600-39609600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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