Variant report

Variant	rs17059664
Chromosome Location	chr13:39901622-39901623
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73465687	0.86[AFR][1000 genomes]
rs73467309	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39897600-39902400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:39899400-39902400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:39899400-39902600	Weak transcription	Right Ventricle	heart
4	chr13:39899400-39904000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:39899400-39904000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr13:39899400-39904000	Weak transcription	Gastric	stomach
7	chr13:39899400-39904800	Weak transcription	Left Ventricle	heart
8	chr13:39899600-39903400	Weak transcription	Ovary	ovary
9	chr13:39900000-39901800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:39900400-39903600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr13:39900400-39906800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr13:39900800-39903400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr13:39901400-39903000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr13:39901400-39903200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr13:39901600-39902600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr13:39901600-39902600	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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