Variant report

Variant	rs73465687
Chromosome Location	chr13:39891042-39891043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17059664	0.86[AFR][1000 genomes]
rs73463766	0.91[AFR][1000 genomes]
rs73467303	0.91[AFR][1000 genomes]
rs73467309	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39886200-39891200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr13:39886200-39891400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:39886400-39896600	Weak transcription	Aorta	Aorta
4	chr13:39888000-39891400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr13:39889000-39891400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr13:39890200-39892200	Enhancers	Adipose Nuclei	Adipose
7	chr13:39890600-39891800	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr13:39890600-39894400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:39890800-39891200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:39890800-39891400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr13:39890800-39891600	Enhancers	Colon Smooth Muscle	Colon
12	chr13:39890800-39891800	Enhancers	Rectal Smooth Muscle	rectum
13	chr13:39890800-39892000	Enhancers	Brain Hippocampus Middle	brain
14	chr13:39890800-39892000	Enhancers	Right Atrium	heart
15	chr13:39890800-39892200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr13:39890800-39892200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr13:39890800-39892200	Enhancers	Fetal Lung	lung
18	chr13:39890800-39892200	Enhancers	NHLF	lung
19	chr13:39891000-39891200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr13:39891000-39891600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr13:39891000-39891600	Enhancers	Fetal Muscle Trunk	muscle
22	chr13:39891000-39891600	Enhancers	Lung	lung
23	chr13:39891000-39891600	Enhancers	Right Ventricle	heart
24	chr13:39891000-39891600	Enhancers	HSMMtube	muscle
25	chr13:39891000-39891800	Enhancers	Brain Angular Gyrus	brain
26	chr13:39891000-39891800	Enhancers	Brain Anterior Caudate	brain
27	chr13:39891000-39891800	Enhancers	Left Ventricle	heart
28	chr13:39891000-39892000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr13:39891000-39892000	Enhancers	Brain Substantia Nigra	brain
30	chr13:39891000-39892000	Enhancers	Stomach Smooth Muscle	stomach
31	chr13:39891000-39892200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr13:39891000-39892600	Enhancers	Fetal Muscle Leg	muscle
33	chr13:39891000-39892600	Enhancers	Ovary	ovary
34	chr13:39891000-39899200	Weak transcription	Fetal Heart	heart

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