Variant report

Variant	rs17060041
Chromosome Location	chr6:131437187-131437188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131206831..131209804-chr6:131436324..131438672,3	MCF-7	breast:
2	chr6:131206179..131207660-chr6:131436807..131438665,12	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10499178	1.00[AFR][1000 genomes]
rs10499181	1.00[AFR][1000 genomes]
rs17059851	1.00[AFR][1000 genomes]
rs17059853	1.00[AFR][1000 genomes]
rs17059909	1.00[AFR][1000 genomes]
rs17059938	1.00[AFR][1000 genomes]
rs17059963	1.00[AFR][1000 genomes]
rs17059968	1.00[AFR][1000 genomes]
rs17059974	1.00[AFR][1000 genomes]
rs17059981	1.00[AFR][1000 genomes]
rs1972244	1.00[AFR][1000 genomes]
rs1999473	1.00[AFR][1000 genomes]
rs2183968	1.00[AFR][1000 genomes]
rs3777451	1.00[AFR][1000 genomes]
rs3777456	1.00[AFR][1000 genomes]
rs3822860	1.00[AFR][1000 genomes]
rs3822865	1.00[AFR][1000 genomes]
rs4142572	1.00[AFR][1000 genomes]
rs4142581	1.00[AFR][1000 genomes]
rs45577234	1.00[AFR][1000 genomes]
rs57189640	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57208456	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58130017	1.00[AFR][1000 genomes]
rs59036192	1.00[AFR][1000 genomes]
rs59627131	1.00[AFR][1000 genomes]
rs60215702	1.00[AFR][1000 genomes]
rs60697593	1.00[AFR][1000 genomes]
rs60877807	1.00[AFR][1000 genomes]
rs61217522	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61625259	1.00[AFR][1000 genomes]
rs72499769	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv830807	chr6:131390952-131581931	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1019112	chr6:131409284-131452300	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2761029	chr6:131413789-131452312	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1016925	chr6:131418532-131452300	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131428800-131437200	Weak transcription	NHLF	lung
2	chr6:131436000-131437400	Weak transcription	Liver	Liver
3	chr6:131436600-131437200	Enhancers	HepG2	liver
4	chr6:131437000-131437200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:131437000-131437200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:131437000-131438000	Enhancers	Adipose Nuclei	Adipose

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