Variant report

Variant	rs3777456
Chromosome Location	chr6:131249824-131249825
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10499175	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10499176	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10499178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10499181	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1413753	0.87[ASN][1000 genomes]
rs17053471	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs17059669	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17059726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17059735	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17059739	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17059760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17059787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17059799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17059801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17059808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17059810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17059851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17059853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17059909	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17059938	0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs17059963	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17059968	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17059974	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17059981	0.87[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes]
rs17060041	1.00[AFR][1000 genomes]
rs1972244	1.00[AFR][1000 genomes]
rs1999473	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2183968	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2275064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2281488	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2281489	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2839942	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs3777433	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3777437	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777443	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3777444	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777447	1.00[ASW][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777448	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777451	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777464	0.84[CHD][hapmap]
rs3822859	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3822860	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3822865	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs41285328	1.00[AMR][1000 genomes]
rs41311408	1.00[AMR][1000 genomes]
rs4142572	1.00[AFR][1000 genomes]
rs4142581	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs45577234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57189640	1.00[AFR][1000 genomes]
rs57208456	1.00[AFR][1000 genomes]
rs57211621	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58130017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59036192	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs59271461	0.87[ASN][1000 genomes]
rs59627131	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs60215702	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs60697593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60732147	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60877807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60954662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61217522	1.00[AFR][1000 genomes]
rs61625259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6908154	0.87[ASN][1000 genomes]
rs6908659	0.87[ASN][1000 genomes]
rs714709	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72499769	1.00[AFR][1000 genomes]
rs9388858	0.87[ASN][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
3	chr6:131234000-131250200	Weak transcription	Ovary	ovary
4	chr6:131234000-131250600	Weak transcription	Fetal Stomach	stomach
5	chr6:131234600-131250200	Weak transcription	Pancreas	Pancrea
6	chr6:131234800-131254000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
8	chr6:131236400-131254000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:131238400-131250200	Weak transcription	Aorta	Aorta
10	chr6:131239200-131252600	Weak transcription	Dnd41	blood
11	chr6:131240000-131253600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:131242600-131254800	Weak transcription	Fetal Kidney	kidney
13	chr6:131242800-131255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:131244200-131250000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:131244800-131255000	Weak transcription	Lung	lung
17	chr6:131245000-131254000	Weak transcription	Left Ventricle	heart
18	chr6:131245000-131254800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:131245400-131253600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:131246200-131252200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:131246200-131254200	Weak transcription	Fetal Intestine Large	intestine
22	chr6:131246200-131264800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr6:131246600-131254800	Weak transcription	Placenta	Placenta
24	chr6:131246800-131251200	Enhancers	Brain Angular Gyrus	brain
25	chr6:131247800-131254200	Weak transcription	Fetal Intestine Small	intestine
26	chr6:131248400-131250000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:131248600-131251200	Enhancers	Brain Cingulate Gyrus	brain
28	chr6:131248800-131253800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:131248800-131254200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr6:131248800-131255000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr6:131249000-131250000	Weak transcription	Brain Anterior Caudate	brain
32	chr6:131249000-131250000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:131249000-131250800	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr6:131249000-131251200	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr6:131249000-131252600	Weak transcription	HepG2	liver
36	chr6:131249000-131254200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:131249000-131254800	Weak transcription	HMEC	breast
38	chr6:131249000-131259000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:131249200-131250000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:131249200-131250200	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr6:131249200-131250800	Enhancers	Adipose Nuclei	Adipose
42	chr6:131249200-131251000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:131249200-131253600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr6:131249200-131253800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr6:131249200-131254000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr6:131249200-131255000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:131249400-131250000	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr6:131249400-131250000	Enhancers	NHLF	lung
49	chr6:131249400-131250600	Enhancers	Right Atrium	heart
50	chr6:131249400-131251200	Enhancers	Psoas Muscle	Psoas

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