Variant report

Variant	rs17059669
Chromosome Location	chr6:131159792-131159793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10499175	0.93[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs10499176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10499178	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs10499181	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs11489193	0.92[AFR][1000 genomes]
rs12110548	0.92[AFR][1000 genomes]
rs1334690	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1413753	0.98[ASN][1000 genomes]
rs17053471	0.98[ASN][1000 genomes]
rs17059726	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17059735	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17059739	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17059760	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17059787	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17059799	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17059801	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17059808	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17059810	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs17059851	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17059853	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs17059909	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes]
rs17059938	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs17059963	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17059968	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes]
rs17059974	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[EUR][1000 genomes]
rs17059981	0.81[CHB][hapmap]
rs1999473	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs2183968	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs2275064	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2281488	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2281489	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2839942	0.93[CHB][hapmap];0.85[ASN][1000 genomes]
rs3777433	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3777437	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3777443	0.85[ASN][1000 genomes]
rs3777444	1.00[CEU][hapmap];0.87[ASN][1000 genomes]
rs3777447	0.86[CHB][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3777448	1.00[CEU][hapmap];0.92[CHB][hapmap];0.80[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3777451	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3777456	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3822859	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3822860	0.93[CHB][hapmap];0.87[ASN][1000 genomes]
rs3822865	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs4142581	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs45577234	0.90[EUR][1000 genomes]
rs56975754	0.92[AFR][1000 genomes]
rs57211621	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58130017	0.90[EUR][1000 genomes]
rs59036192	0.85[ASN][1000 genomes]
rs60667194	0.92[AFR][1000 genomes]
rs60697593	0.81[EUR][1000 genomes]
rs60732147	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60877807	0.90[EUR][1000 genomes]
rs60954662	0.90[EUR][1000 genomes]
rs61366454	0.89[AFR][1000 genomes]
rs61625259	0.90[EUR][1000 genomes]
rs6904526	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6908154	0.98[ASN][1000 genomes]
rs6908659	0.98[ASN][1000 genomes]
rs714709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774098	0.92[AFR][1000 genomes]
rs73774101	0.92[AFR][1000 genomes]
rs73775307	0.97[AFR][1000 genomes]
rs73775308	0.97[AFR][1000 genomes]
rs73775311	0.97[AFR][1000 genomes]
rs73775317	0.89[AFR][1000 genomes]
rs73775318	0.89[AFR][1000 genomes]
rs73775323	0.89[AFR][1000 genomes]
rs73775325	0.87[AFR][1000 genomes]
rs73775339	0.80[AFR][1000 genomes]
rs9388858	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131132000-131173800	Weak transcription	HSMMtube	muscle
2	chr6:131136400-131174400	Weak transcription	Left Ventricle	heart
3	chr6:131149000-131172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
5	chr6:131149600-131160400	Weak transcription	Fetal Brain Male	brain
6	chr6:131150400-131161400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:131150600-131183400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:131152400-131161800	Strong transcription	Fetal Intestine Large	intestine
10	chr6:131152800-131168000	Weak transcription	Fetal Kidney	kidney
11	chr6:131153600-131162400	Weak transcription	Fetal Lung	lung
12	chr6:131154000-131173800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:131154600-131160800	Weak transcription	Fetal Intestine Small	intestine
14	chr6:131155000-131160200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:131155000-131174600	Weak transcription	Aorta	Aorta
16	chr6:131156200-131159800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:131156200-131161000	Genic enhancers	Liver	Liver
18	chr6:131157400-131160000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:131157600-131170200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:131157800-131161400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:131157800-131162400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:131157800-131163400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:131157800-131168200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:131157800-131170200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:131158000-131160000	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:131158000-131172200	Weak transcription	Brain Anterior Caudate	brain
27	chr6:131158200-131160000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr6:131158200-131160000	Weak transcription	Brain Substantia Nigra	brain
29	chr6:131158200-131162200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:131158200-131163000	Strong transcription	HepG2	liver
31	chr6:131158200-131173800	Weak transcription	NH-A	brain
32	chr6:131158200-131179400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:131158200-131190600	Weak transcription	Spleen	Spleen
34	chr6:131158200-131214400	Weak transcription	Lung	lung
35	chr6:131158400-131160800	Strong transcription	Fetal Muscle Leg	muscle
36	chr6:131158400-131163000	Strong transcription	Fetal Muscle Trunk	muscle
37	chr6:131158400-131168200	Weak transcription	Primary B cells from peripheral blood	blood
38	chr6:131158600-131160000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:131158600-131160800	Weak transcription	Primary B cells from cord blood	blood
40	chr6:131158600-131174400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:131158800-131160000	Weak transcription	Brain Angular Gyrus	brain
42	chr6:131158800-131160800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:131159000-131159800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:131159000-131162200	Weak transcription	Osteobl	bone
45	chr6:131159000-131174600	Weak transcription	Placenta	Placenta
46	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
47	chr6:131159200-131160800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:131159200-131161400	Strong transcription	HSMM	muscle
49	chr6:131159400-131161200	Enhancers	Adipose Nuclei	Adipose
50	chr6:131159600-131159800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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