The 2.0 version of rSNPBase

Variant report

Variant rs1334690
Chromosome Location chr6:131189964-131189965
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:131149400-131213200 Weak transcription Pancreas Pancrea
2 chr6:131151600-131216600 Weak transcription Primary hematopoietic stem cells short term culture blood
3 chr6:131158200-131190600 Weak transcription Spleen Spleen
4 chr6:131158200-131214400 Weak transcription Lung lung
5 chr6:131159000-131229000 Weak transcription Colonic Mucosa Colon
6 chr6:131168400-131190600 Weak transcription Duodenum Mucosa Duodenum
7 chr6:131168800-131214600 Weak transcription Fetal Kidney kidney
8 chr6:131170400-131193000 Weak transcription Fetal Thymus thymus
9 chr6:131170400-131217400 Weak transcription Psoas Muscle Psoas
10 chr6:131170600-131190400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr6:131170600-131192600 Weak transcription Primary hematopoietic stem cells blood
12 chr6:131170600-131193000 Weak transcription Primary T cells from cord blood blood
13 chr6:131170600-131213800 Weak transcription GM12878-XiMat blood
14 chr6:131171200-131209600 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr6:131171200-131223200 Weak transcription Right Ventricle heart
16 chr6:131171400-131220200 Weak transcription Fetal Brain Male brain
17 chr6:131173000-131207000 Weak transcription Brain Substantia Nigra brain
18 chr6:131173400-131190800 Weak transcription Esophagus oesophagus
19 chr6:131175000-131222400 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr6:131175200-131190600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr6:131175200-131190600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr6:131175200-131214000 Weak transcription H9 Cell Line embryonic stem cell
23 chr6:131175400-131194200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
24 chr6:131175400-131203600 Weak transcription A549 lung
25 chr6:131175400-131211200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr6:131175600-131190400 Weak transcription Colon Smooth Muscle Colon
27 chr6:131175600-131190600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr6:131175600-131205400 Weak transcription NH-A brain
29 chr6:131175600-131221600 Weak transcription Rectal Smooth Muscle rectum
30 chr6:131176200-131190800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
31 chr6:131177200-131209200 Weak transcription HUVEC blood vessel
32 chr6:131179200-131214000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr6:131179400-131222400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr6:131179600-131210600 Weak transcription NHEK skin
35 chr6:131179600-131215000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr6:131180000-131203200 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr6:131180800-131191600 Strong transcription Breast Myoepithelial Primary Cells Breast
38 chr6:131181400-131193800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr6:131181400-131214400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr6:131182600-131191600 Strong transcription Dnd41 blood
41 chr6:131183000-131192400 Weak transcription Small Intestine intestine
42 chr6:131183000-131192400 Weak transcription Hela-S3 cervix
43 chr6:131184800-131193600 Weak transcription iPS-15b Cell Line embryonic stem cell
44 chr6:131184800-131200800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr6:131185800-131214400 Weak transcription Thymus Thymus
46 chr6:131186800-131190200 Weak transcription Rectal Mucosa Donor 29 rectum
47 chr6:131186800-131190400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
48 chr6:131187000-131190400 Weak transcription Fetal Stomach stomach
49 chr6:131187000-131190600 Weak transcription Fetal Intestine Small intestine
50 chr6:131187000-131203200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain

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Last update: Aug 31, 2015