Variant report

Variant	rs73774098
Chromosome Location	chr6:131150513-131150514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11489193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1334690	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17059669	0.92[AFR][1000 genomes]
rs2281489	0.95[AFR][1000 genomes]
rs56975754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60135051	1.00[AMR][1000 genomes]
rs60667194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61366454	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6904526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs714709	0.97[AFR][1000 genomes]
rs73774101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774324	1.00[AMR][1000 genomes]
rs73774336	1.00[AMR][1000 genomes]
rs73774344	1.00[AMR][1000 genomes]
rs73774346	1.00[AMR][1000 genomes]
rs73775307	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73775308	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73775311	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73775317	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73775318	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73775323	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73775325	0.84[AFR][1000 genomes]
rs73775339	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131132000-131159200	Weak transcription	HSMM	muscle
2	chr6:131132000-131173800	Weak transcription	HSMMtube	muscle
3	chr6:131136400-131174400	Weak transcription	Left Ventricle	heart
4	chr6:131147600-131157800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:131148000-131157000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:131148600-131150600	Active TSS	Fetal Intestine Large	intestine
7	chr6:131148600-131151400	Active TSS	Fetal Intestine Small	intestine
8	chr6:131148800-131158000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:131149000-131172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:131149200-131151200	Enhancers	Fetal Stomach	stomach
11	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
12	chr6:131149600-131152400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:131149600-131160400	Weak transcription	Fetal Brain Male	brain
14	chr6:131149800-131151800	Flanking Active TSS	Liver	Liver
15	chr6:131150000-131151600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:131150000-131154800	Weak transcription	Aorta	Aorta
17	chr6:131150400-131150600	Active TSS	HepG2	liver
18	chr6:131150400-131150800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:131150400-131161400	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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