Variant report

Variant	rs17059810
Chromosome Location	chr6:131229167-131229168
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10499175	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10499176	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10499178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10499181	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1413753	0.89[ASN][1000 genomes]
rs17053471	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs17059669	0.89[ASN][1000 genomes]
rs17059726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17059735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17059739	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17059760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17059787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17059799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17059801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17059808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17059851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17059853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17059909	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17059938	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17059963	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17059968	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17059974	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17059981	0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes]
rs1972244	1.00[AFR][1000 genomes]
rs1999473	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2183968	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2275064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2281488	0.90[ASN][1000 genomes]
rs2281489	0.90[ASN][1000 genomes]
rs2839942	1.00[CHB][hapmap];0.80[JPT][hapmap];0.96[ASN][1000 genomes]
rs3777433	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3777437	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3777443	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3777444	1.00[CEU][hapmap];0.98[ASN][1000 genomes]
rs3777447	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3777448	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3777451	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3777456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3822859	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3822860	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3822865	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs41285328	1.00[AMR][1000 genomes]
rs41311408	1.00[AMR][1000 genomes]
rs4142572	1.00[AFR][1000 genomes]
rs4142581	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs45577234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57211621	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs58130017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59036192	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs59271461	0.85[ASN][1000 genomes]
rs59627131	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs60215702	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs60697593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60732147	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs60877807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60954662	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61625259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6908154	0.89[ASN][1000 genomes]
rs6908659	0.89[ASN][1000 genomes]
rs714709	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs72499769	1.00[AFR][1000 genomes]
rs9388858	0.89[ASN][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131191000-131234400	Weak transcription	Esophagus	oesophagus
2	chr6:131191200-131233000	Weak transcription	Spleen	Spleen
3	chr6:131203600-131234200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:131209000-131234000	Weak transcription	Fetal Thymus	thymus
5	chr6:131211200-131234000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:131211400-131234200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:131213600-131232200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:131215200-131234000	Weak transcription	Primary T cells from cord blood	blood
9	chr6:131215200-131234200	Weak transcription	Thymus	Thymus
10	chr6:131215400-131238200	Weak transcription	Aorta	Aorta
11	chr6:131215600-131233800	Weak transcription	Pancreas	Pancrea
12	chr6:131216600-131233800	Weak transcription	Ovary	ovary
13	chr6:131216800-131230200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:131222200-131229200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:131222200-131229200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:131222200-131229200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:131222200-131230400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:131222200-131234000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr6:131222200-131234200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:131222200-131234400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:131222200-131236400	Weak transcription	Fetal Lung	lung
23	chr6:131222200-131248400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
25	chr6:131222400-131229200	Weak transcription	Brain Anterior Caudate	brain
26	chr6:131222400-131232800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:131222400-131233200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:131222400-131233200	Weak transcription	HSMMtube	muscle
29	chr6:131222400-131233800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:131222400-131238200	Weak transcription	Dnd41	blood
31	chr6:131222400-131248600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:131222600-131241200	Weak transcription	A549	lung
33	chr6:131223600-131229400	Weak transcription	Right Ventricle	heart
34	chr6:131223600-131233600	Weak transcription	Lung	lung
35	chr6:131224200-131233000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr6:131224400-131233600	Weak transcription	Fetal Stomach	stomach
37	chr6:131224400-131241600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:131225200-131229200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:131225600-131229400	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr6:131226200-131229600	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr6:131226800-131229400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:131226800-131230600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:131227000-131229600	Enhancers	HMEC	breast
44	chr6:131227000-131229600	Enhancers	NHLF	lung
45	chr6:131227400-131230600	Enhancers	NHDF-Ad	bronchial
46	chr6:131227600-131229600	Enhancers	NH-A	brain
47	chr6:131227600-131229600	Enhancers	Osteobl	bone
48	chr6:131227800-131230400	Enhancers	GM12878-XiMat	blood
49	chr6:131227800-131230600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:131228000-131229600	Enhancers	HUVEC	blood vessel

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