Variant report

Variant	rs3777447
Chromosome Location	chr6:131218379-131218380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131217137..131218661-chr6:131380845..131382690,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10499175	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10499176	0.92[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10499178	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10499181	1.00[AFR][1000 genomes]
rs1413753	0.89[ASN][1000 genomes]
rs17053471	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs17059669	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17059726	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17059735	1.00[ASW][hapmap];0.93[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17059739	0.93[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17059760	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17059787	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059799	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059801	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059808	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059810	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17059851	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17059853	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17059909	0.85[CHB][hapmap];0.87[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17059938	0.80[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes]
rs17059963	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17059968	0.80[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17059974	0.80[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17059981	0.80[CHB][hapmap];1.00[AFR][1000 genomes]
rs1972244	1.00[AFR][1000 genomes]
rs1999473	0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2183968	1.00[ASW][hapmap];0.80[CHB][hapmap];0.91[CHD][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2275064	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2281488	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2281489	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2839942	0.93[CHB][hapmap];0.96[ASN][1000 genomes]
rs3777433	0.86[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777443	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3777444	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777448	1.00[ASW][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777451	0.93[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777456	1.00[ASW][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777464	0.81[CHD][hapmap]
rs3822859	0.93[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3822860	0.93[CHB][hapmap];1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3822865	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4142572	1.00[AFR][1000 genomes]
rs4142581	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs45577234	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57211621	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58130017	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59036192	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs59271461	0.85[ASN][1000 genomes]
rs59627131	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs60215702	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs60697593	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs60732147	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60877807	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60954662	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61625259	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6908154	0.89[ASN][1000 genomes]
rs6908659	0.89[ASN][1000 genomes]
rs714709	0.86[CHB][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72499769	1.00[AFR][1000 genomes]
rs9388858	0.89[ASN][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
2	chr6:131171200-131223200	Weak transcription	Right Ventricle	heart
3	chr6:131171400-131220200	Weak transcription	Fetal Brain Male	brain
4	chr6:131175000-131222400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:131175600-131221600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:131179400-131222400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:131187000-131223200	Weak transcription	Gastric	stomach
8	chr6:131190400-131227000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:131190800-131224200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:131191000-131234400	Weak transcription	Esophagus	oesophagus
11	chr6:131191200-131224200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:131191200-131233000	Weak transcription	Spleen	Spleen
13	chr6:131194200-131222000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:131195800-131224200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:131198600-131224200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:131201000-131222400	Strong transcription	Dnd41	blood
17	chr6:131201800-131222000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:131203600-131234200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:131204400-131228600	Weak transcription	Stomach Mucosa	stomach
20	chr6:131205200-131222000	Weak transcription	A549	lung
21	chr6:131208000-131222000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:131209000-131234000	Weak transcription	Fetal Thymus	thymus
23	chr6:131209200-131219600	Weak transcription	Fetal Heart	heart
24	chr6:131209600-131222000	Weak transcription	HMEC	breast
25	chr6:131209800-131228000	Weak transcription	HUVEC	blood vessel
26	chr6:131210800-131222400	Strong transcription	HepG2	liver
27	chr6:131211000-131228400	Weak transcription	Small Intestine	intestine
28	chr6:131211200-131222000	Weak transcription	NHEK	skin
29	chr6:131211200-131234000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:131211400-131224000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:131211400-131234200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:131211600-131219600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr6:131211800-131219600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:131212000-131224600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr6:131212200-131220200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:131212200-131221800	Weak transcription	NH-A	brain
37	chr6:131212200-131222000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:131213400-131223400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr6:131213600-131232200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:131214400-131218800	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:131215000-131219600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr6:131215000-131224200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr6:131215000-131228800	Weak transcription	Liver	Liver
44	chr6:131215200-131222000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr6:131215200-131222400	Strong transcription	Fetal Muscle Leg	muscle
46	chr6:131215200-131234000	Weak transcription	Primary T cells from cord blood	blood
47	chr6:131215200-131234200	Weak transcription	Thymus	Thymus
48	chr6:131215400-131221800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:131215400-131223400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:131215400-131223800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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