Variant report

Variant	rs3777433
Chromosome Location	chr6:131185337-131185338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131184648..131186965-chr6:131190453..131192235,2	K562	blood:
2	chr6:131184620..131188311-chr6:131189838..131191757,3	K562	blood:

Variant related genes	Relation type
ENSG00000079819	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10499175	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10499176	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10499178	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10499181	1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes]
rs1413753	0.90[ASN][1000 genomes]
rs17053471	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17059669	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17059726	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17059735	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17059739	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17059760	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17059787	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17059799	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17059801	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17059808	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17059810	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17059851	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17059853	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17059909	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17059938	0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17059963	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs17059968	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs17059974	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs17059981	0.81[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes]
rs1972244	1.00[AFR][1000 genomes]
rs1999473	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2183968	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2275064	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2281488	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2281489	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2839942	0.93[CHB][hapmap];0.80[JPT][hapmap];0.93[ASN][1000 genomes]
rs3777437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777443	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3777444	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3777447	0.86[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777448	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777451	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3777456	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3822859	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3822860	0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3822865	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4142572	1.00[AFR][1000 genomes]
rs4142581	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs45577234	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57211621	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58130017	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs59036192	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs59271461	0.82[ASN][1000 genomes]
rs59627131	1.00[AFR][1000 genomes]
rs60215702	1.00[AFR][1000 genomes]
rs60697593	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs60732147	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60877807	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs60954662	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61625259	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6908154	0.90[ASN][1000 genomes]
rs6908659	0.90[ASN][1000 genomes]
rs714709	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72499769	1.00[AFR][1000 genomes]
rs9388858	0.90[ASN][1000 genomes]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
2	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:131158200-131190600	Weak transcription	Spleen	Spleen
4	chr6:131158200-131214400	Weak transcription	Lung	lung
5	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
6	chr6:131161000-131186600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:131161800-131186400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:131168400-131190600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:131168800-131214600	Weak transcription	Fetal Kidney	kidney
10	chr6:131170000-131189000	Strong transcription	Adipose Nuclei	Adipose
11	chr6:131170400-131193000	Weak transcription	Fetal Thymus	thymus
12	chr6:131170400-131217400	Weak transcription	Psoas Muscle	Psoas
13	chr6:131170600-131187000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:131170600-131190400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:131170600-131192600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:131170600-131193000	Weak transcription	Primary T cells from cord blood	blood
17	chr6:131170600-131213800	Weak transcription	GM12878-XiMat	blood
18	chr6:131170800-131189000	Strong transcription	Fetal Muscle Trunk	muscle
19	chr6:131171200-131209600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:131171200-131223200	Weak transcription	Right Ventricle	heart
21	chr6:131171400-131220200	Weak transcription	Fetal Brain Male	brain
22	chr6:131172600-131185600	Weak transcription	Gastric	stomach
23	chr6:131172600-131186600	Weak transcription	Brain Angular Gyrus	brain
24	chr6:131172800-131189400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:131173000-131207000	Weak transcription	Brain Substantia Nigra	brain
26	chr6:131173400-131190800	Weak transcription	Esophagus	oesophagus
27	chr6:131174400-131185600	Weak transcription	Primary B cells from cord blood	blood
28	chr6:131175000-131185400	Weak transcription	Aorta	Aorta
29	chr6:131175000-131222400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr6:131175200-131190600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:131175200-131190600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:131175200-131214000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr6:131175400-131185400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:131175400-131188000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:131175400-131194200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr6:131175400-131203600	Weak transcription	A549	lung
37	chr6:131175400-131211200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:131175600-131185600	Weak transcription	HSMMtube	muscle
39	chr6:131175600-131188200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:131175600-131190400	Weak transcription	Colon Smooth Muscle	Colon
41	chr6:131175600-131190600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:131175600-131205400	Weak transcription	NH-A	brain
43	chr6:131175600-131221600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr6:131176200-131190800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr6:131176800-131188400	Strong transcription	Fetal Lung	lung
46	chr6:131177200-131209200	Weak transcription	HUVEC	blood vessel
47	chr6:131179200-131214000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:131179400-131222400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:131179600-131210600	Weak transcription	NHEK	skin
50	chr6:131179600-131215000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links