Variant report

Variant	rs9388858
Chromosome Location	chr6:131150127-131150128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10499175	1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs10499176	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10499178	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10499181	0.81[CHB][hapmap]
rs1114644	0.80[TSI][hapmap]
rs13217139	0.83[EUR][1000 genomes]
rs1334689	0.92[TSI][hapmap]
rs1413753	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1571911	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs1582055	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs17053471	1.00[ASN][1000 genomes]
rs17059669	0.98[ASN][1000 genomes]
rs17059726	1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs17059735	1.00[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs17059739	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17059760	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs17059787	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs17059799	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs17059801	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs17059808	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs17059810	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs17059851	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs17059853	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17059909	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs17059938	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs17059968	0.87[CHB][hapmap]
rs17059974	0.87[CHB][hapmap]
rs17059981	0.87[CHB][hapmap]
rs1999473	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs2008598	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs2027117	0.84[CEU][hapmap];0.95[TSI][hapmap]
rs2039509	0.85[EUR][1000 genomes]
rs2039830	0.89[CEU][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs2183969	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2184408	0.84[EUR][1000 genomes]
rs2275064	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs2281488	0.99[ASN][1000 genomes]
rs2281489	0.99[ASN][1000 genomes]
rs2839942	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3777433	0.93[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs3777437	0.89[ASN][1000 genomes]
rs3777443	0.85[ASN][1000 genomes]
rs3777444	0.87[ASN][1000 genomes]
rs3777446	0.80[EUR][1000 genomes]
rs3777447	0.93[CHB][hapmap];0.85[CHD][hapmap];0.89[ASN][1000 genomes]
rs3777448	1.00[CHB][hapmap];0.88[CHD][hapmap];0.89[ASN][1000 genomes]
rs3777451	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs3777456	1.00[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs3822859	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs3822860	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs3822865	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4075265	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs4142581	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4895897	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs4895898	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs57211621	0.95[ASN][1000 genomes]
rs59036192	0.85[ASN][1000 genomes]
rs60732147	0.94[ASN][1000 genomes]
rs6536	0.85[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs6569706	0.82[EUR][1000 genomes]
rs6569709	0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs6569711	0.82[EUR][1000 genomes]
rs6907284	0.84[CEU][hapmap];0.86[TSI][hapmap]
rs6908154	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908659	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921455	0.88[EUR][1000 genomes]
rs6938735	0.91[EUR][1000 genomes]
rs714709	0.93[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs761835	0.85[EUR][1000 genomes]
rs7741462	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs7754351	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs7763473	0.88[EUR][1000 genomes]
rs7766004	0.92[TSI][hapmap]
rs7766505	0.89[TSI][hapmap]
rs7768048	0.84[CEU][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs7773093	0.81[EUR][1000 genomes]
rs7775288	0.81[EUR][1000 genomes]
rs9285468	0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs9321256	0.80[EUR][1000 genomes]
rs9375777	0.91[EUR][1000 genomes]
rs9388867	0.92[TSI][hapmap]
rs9492764	0.89[TSI][hapmap]
rs998228	0.84[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131132000-131159200	Weak transcription	HSMM	muscle
2	chr6:131132000-131173800	Weak transcription	HSMMtube	muscle
3	chr6:131136400-131174400	Weak transcription	Left Ventricle	heart
4	chr6:131147600-131157800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:131148000-131157000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:131148600-131150400	Active TSS	Duodenum Mucosa	Duodenum
7	chr6:131148600-131150600	Active TSS	Fetal Intestine Large	intestine
8	chr6:131148600-131151400	Active TSS	Fetal Intestine Small	intestine
9	chr6:131148800-131158000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:131149000-131172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:131149200-131151200	Enhancers	Fetal Stomach	stomach
12	chr6:131149400-131150400	Flanking Active TSS	HepG2	liver
13	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
14	chr6:131149600-131152400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:131149600-131160400	Weak transcription	Fetal Brain Male	brain
16	chr6:131149800-131151800	Flanking Active TSS	Liver	Liver
17	chr6:131150000-131151600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:131150000-131154800	Weak transcription	Aorta	Aorta

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