Variant report

Variant	rs2183969
Chromosome Location	chr6:131223807-131223808
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1006655	0.83[CEU][hapmap]
rs10782244	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1114644	0.84[CEU][hapmap]
rs13217139	0.98[EUR][1000 genomes]
rs1334689	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1571911	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1582055	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs1999474	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2008598	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs2027117	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2039509	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs2039830	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2105250	0.80[CEU][hapmap]
rs2184408	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs2839942	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3777446	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4075265	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs4895897	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs4895898	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4897475	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6536	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs6569706	0.84[EUR][1000 genomes]
rs6569709	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs6569711	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6907284	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs6908154	0.80[EUR][1000 genomes]
rs6908659	0.81[EUR][1000 genomes]
rs6921455	0.81[EUR][1000 genomes]
rs6938309	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6938735	0.88[EUR][1000 genomes]
rs761835	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs7738572	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7741462	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7748468	0.94[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7754351	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7761655	0.83[CEU][hapmap]
rs7763473	0.81[EUR][1000 genomes]
rs7766004	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7766505	0.88[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7768048	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7769310	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7773093	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7774832	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9285468	0.94[CEU][hapmap];0.98[EUR][1000 genomes]
rs9321256	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9375777	0.87[EUR][1000 genomes]
rs9375786	0.83[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9388858	0.81[EUR][1000 genomes]
rs9388867	0.94[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9388870	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs9388871	0.89[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9402298	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9402304	0.83[CEU][hapmap]
rs9402305	0.83[CEU][hapmap]
rs9492764	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs998228	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
2	chr6:131190400-131227000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:131190800-131224200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:131191000-131234400	Weak transcription	Esophagus	oesophagus
5	chr6:131191200-131224200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:131191200-131233000	Weak transcription	Spleen	Spleen
7	chr6:131195800-131224200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:131198600-131224200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:131203600-131234200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:131204400-131228600	Weak transcription	Stomach Mucosa	stomach
11	chr6:131209000-131234000	Weak transcription	Fetal Thymus	thymus
12	chr6:131209800-131228000	Weak transcription	HUVEC	blood vessel
13	chr6:131211000-131228400	Weak transcription	Small Intestine	intestine
14	chr6:131211200-131234000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:131211400-131224000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:131211400-131234200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:131212000-131224600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:131213600-131232200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:131215000-131224200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:131215000-131228800	Weak transcription	Liver	Liver
21	chr6:131215200-131234000	Weak transcription	Primary T cells from cord blood	blood
22	chr6:131215200-131234200	Weak transcription	Thymus	Thymus
23	chr6:131215400-131238200	Weak transcription	Aorta	Aorta
24	chr6:131215600-131228600	Weak transcription	Fetal Intestine Small	intestine
25	chr6:131215600-131233800	Weak transcription	Pancreas	Pancrea
26	chr6:131215800-131228400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:131216600-131233800	Weak transcription	Ovary	ovary
28	chr6:131216800-131224200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:131216800-131226200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:131216800-131227800	Weak transcription	GM12878-XiMat	blood
31	chr6:131216800-131230200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:131218200-131224400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:131218200-131228600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:131220000-131224200	Strong transcription	Fetal Muscle Trunk	muscle
35	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:131220800-131228400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:131220800-131228600	Weak transcription	Fetal Intestine Large	intestine
38	chr6:131220800-131228800	Weak transcription	Brain Angular Gyrus	brain
39	chr6:131222000-131224400	Strong transcription	Fetal Stomach	stomach
40	chr6:131222200-131224000	Weak transcription	Placenta	Placenta
41	chr6:131222200-131224200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr6:131222200-131229200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr6:131222200-131229200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:131222200-131229200	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:131222200-131230400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr6:131222200-131234000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr6:131222200-131234200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:131222200-131234400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:131222200-131236400	Weak transcription	Fetal Lung	lung
50	chr6:131222200-131248400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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