Variant report

Variant	rs7761655
Chromosome Location	chr6:131274511-131274512
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1006655	1.00[CEU][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10782244	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1334689	0.94[CEU][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1412540	0.81[CEU][hapmap]
rs1571911	0.82[CEU][hapmap];0.84[AFR][1000 genomes]
rs1571912	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1977578	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs1999474	0.94[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2027117	0.82[CEU][hapmap]
rs2039509	0.84[CEU][hapmap]
rs2039830	0.82[CEU][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2105250	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2183969	0.83[CEU][hapmap]
rs2184408	0.82[AFR][1000 genomes]
rs2327005	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs3777446	0.83[AMR][1000 genomes]
rs4895898	0.83[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4897475	0.94[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6536	0.84[AFR][1000 genomes]
rs6569709	0.88[CEU][hapmap];0.84[AFR][1000 genomes]
rs6907284	0.83[CEU][hapmap]
rs6920493	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932317	0.81[EUR][1000 genomes]
rs6935267	0.82[AFR][1000 genomes]
rs6938309	0.89[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6938735	0.80[AFR][1000 genomes]
rs761835	0.80[CEU][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs7738572	0.89[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7741462	0.83[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7746714	0.81[CEU][hapmap]
rs7748468	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7754351	0.83[CEU][hapmap]
rs7756269	0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766004	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7766505	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs7768048	0.82[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7769310	0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7774832	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9285468	0.88[CEU][hapmap];0.84[AFR][1000 genomes]
rs9375786	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9388867	0.88[CEU][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9388870	0.94[CEU][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9388871	0.94[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9402298	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9402304	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9402305	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9402307	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs9483192	0.87[YRI][hapmap]
rs9483203	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs9492764	0.94[CEU][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs966825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs977140	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9885632	0.82[CEU][hapmap]
rs998228	0.83[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
4	chr6:131255000-131274600	Weak transcription	Fetal Stomach	stomach
5	chr6:131255200-131276000	Weak transcription	Left Ventricle	heart
6	chr6:131255400-131276200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:131255400-131288800	Weak transcription	Fetal Kidney	kidney
8	chr6:131255800-131276200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:131255800-131277400	Weak transcription	Psoas Muscle	Psoas
10	chr6:131256000-131279400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:131257400-131281800	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:131260000-131286200	Weak transcription	HSMMtube	muscle
13	chr6:131264800-131277800	Weak transcription	Gastric	stomach
14	chr6:131265600-131276000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:131266000-131275000	Weak transcription	A549	lung
16	chr6:131266000-131280600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:131266000-131283800	Weak transcription	Lung	lung
18	chr6:131266000-131287600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:131266800-131277200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:131266800-131287200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:131267000-131286000	Weak transcription	Brain Angular Gyrus	brain
22	chr6:131267000-131294800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:131267200-131277000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:131267200-131277200	Weak transcription	Small Intestine	intestine
25	chr6:131267200-131281200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr6:131267200-131282200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr6:131267400-131279600	Weak transcription	HMEC	breast
28	chr6:131267400-131280200	Weak transcription	Brain Anterior Caudate	brain
29	chr6:131267400-131281600	Weak transcription	GM12878-XiMat	blood
30	chr6:131267400-131286000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:131267400-131287200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr6:131267600-131275600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr6:131267600-131275600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr6:131267600-131284000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:131267600-131287200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:131267800-131276000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:131267800-131286000	Weak transcription	NHDF-Ad	bronchial
38	chr6:131267800-131288200	Weak transcription	NH-A	brain
39	chr6:131268200-131279400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr6:131268400-131279800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:131268400-131280600	Weak transcription	Brain Hippocampus Middle	brain
42	chr6:131268400-131287200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:131269000-131275000	Weak transcription	Fetal Intestine Large	intestine
44	chr6:131269000-131276000	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr6:131269000-131276000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:131269000-131276200	Weak transcription	Spleen	Spleen
47	chr6:131269000-131276800	Weak transcription	HUVEC	blood vessel
48	chr6:131269000-131290400	Weak transcription	Right Ventricle	heart
49	chr6:131269400-131286000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:131271000-131279200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links