Variant report

Variant	rs7766505
Chromosome Location	chr6:131246774-131246775
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131245188..131247804-chr6:131249935..131252148,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1006655	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs10782244	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13217139	0.91[EUR][1000 genomes]
rs1334689	1.00[CEU][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1571911	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs1582055	0.82[CEU][hapmap]
rs1977578	0.82[CEU][hapmap]
rs1984054	0.85[MKK][hapmap]
rs1999474	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2027117	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2039509	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs2039830	0.88[CEU][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs2105250	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs2183969	0.88[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2184408	0.82[EUR][1000 genomes]
rs2327005	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[MKK][hapmap]
rs2839942	0.87[EUR][1000 genomes]
rs3777446	0.92[EUR][1000 genomes]
rs4075265	0.80[EUR][1000 genomes]
rs4895897	0.82[CEU][hapmap]
rs4895898	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs4897475	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6536	0.84[CEU][hapmap];0.94[TSI][hapmap];0.80[EUR][1000 genomes]
rs6569709	0.94[CEU][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs6569711	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6907284	1.00[ASW][hapmap];0.89[CEU][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs6920493	0.83[EUR][1000 genomes]
rs6938309	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6938735	0.81[EUR][1000 genomes]
rs761835	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs7738572	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7741462	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs7748468	0.94[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7754351	0.88[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7756269	0.83[EUR][1000 genomes]
rs7761655	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs7766004	0.94[CEU][hapmap];0.97[TSI][hapmap];0.97[EUR][1000 genomes]
rs7768048	0.88[CEU][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs7769310	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7773093	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7774832	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9285468	0.94[CEU][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes]
rs9321256	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9375777	0.82[EUR][1000 genomes]
rs9375786	0.94[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9388867	0.94[CEU][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes]
rs9388870	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9388871	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9402298	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9402304	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs9402305	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs9483203	0.82[CEU][hapmap]
rs9492764	1.00[CEU][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs966825	0.83[EUR][1000 genomes]
rs977140	0.81[EUR][1000 genomes]
rs9885632	0.88[CEU][hapmap]
rs998228	0.88[CEU][hapmap];0.93[EUR][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131222200-131248400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:131222400-131248600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:131229600-131248600	Weak transcription	Stomach Mucosa	stomach
6	chr6:131229600-131249600	Weak transcription	Osteobl	bone
7	chr6:131234000-131250200	Weak transcription	Ovary	ovary
8	chr6:131234000-131250600	Weak transcription	Fetal Stomach	stomach
9	chr6:131234600-131248600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:131234600-131249400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:131234600-131250200	Weak transcription	Pancreas	Pancrea
12	chr6:131234800-131246800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:131234800-131247200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:131234800-131254000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
16	chr6:131236400-131254000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:131238400-131248800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:131238400-131249800	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:131238400-131250200	Weak transcription	Aorta	Aorta
20	chr6:131239200-131252600	Weak transcription	Dnd41	blood
21	chr6:131240000-131253600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:131242200-131249600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:131242400-131247600	Strong transcription	HepG2	liver
24	chr6:131242600-131254800	Weak transcription	Fetal Kidney	kidney
25	chr6:131242800-131247200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:131242800-131255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:131244000-131248000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:131244200-131249400	Weak transcription	NHDF-Ad	bronchial
29	chr6:131244200-131250000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr6:131244600-131246800	Weak transcription	Brain Anterior Caudate	brain
32	chr6:131244800-131249800	Weak transcription	HSMMtube	muscle
33	chr6:131244800-131255000	Weak transcription	Lung	lung
34	chr6:131245000-131246800	Weak transcription	Brain Substantia Nigra	brain
35	chr6:131245000-131247600	Strong transcription	HSMM	muscle
36	chr6:131245000-131248600	Weak transcription	Fetal Muscle Leg	muscle
37	chr6:131245000-131248600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:131245000-131249400	Weak transcription	Small Intestine	intestine
39	chr6:131245000-131249600	Weak transcription	Brain Hippocampus Middle	brain
40	chr6:131245000-131254000	Weak transcription	Left Ventricle	heart
41	chr6:131245000-131254800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr6:131245200-131247600	Strong transcription	Adipose Nuclei	Adipose
43	chr6:131245400-131247000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:131245400-131247600	Strong transcription	NHLF	lung
45	chr6:131245400-131248200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:131245400-131248600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:131245400-131249600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:131245400-131249600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:131245400-131253600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:131246200-131248200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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