Variant report

Variant	rs7766004
Chromosome Location	chr6:131253973-131253974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:131251571..131254129-chr6:131255029..131257491,2	K562	blood:
2	chr6:131252764..131256680-chr6:131257995..131261585,5	K562	blood:
3	chr6:131252386..131254496-chr6:131384109..131386191,2	K562	blood:
4	chr6:131250056..131252912-chr6:131253561..131255639,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000079819	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1006655	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10782244	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1114644	0.83[CEU][hapmap];0.83[TSI][hapmap]
rs13217139	0.91[EUR][1000 genomes]
rs1334689	0.94[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1571911	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs1571912	0.88[AMR][1000 genomes]
rs1582055	0.88[CEU][hapmap]
rs1999474	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2008598	0.88[CEU][hapmap]
rs2027117	0.94[CEU][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs2039509	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs2039830	0.94[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2105250	0.86[CEU][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2183969	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2184408	0.85[CEU][hapmap]
rs2839942	0.84[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3777446	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4075265	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs4895897	0.88[CEU][hapmap]
rs4895898	0.94[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4897475	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6536	0.83[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap]
rs6569709	0.88[CEU][hapmap];0.95[GIH][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes]
rs6569711	0.90[EUR][1000 genomes]
rs6907284	0.83[CEU][hapmap];0.88[GIH][hapmap];0.89[TSI][hapmap]
rs6920493	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6938309	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6938735	0.81[EUR][1000 genomes]
rs761835	0.83[CEU][hapmap]
rs7738572	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7741462	0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7748468	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7754351	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs7756269	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7761655	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7766505	0.94[CEU][hapmap];0.97[TSI][hapmap];0.97[EUR][1000 genomes]
rs7768048	0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7769310	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7773093	0.93[EUR][1000 genomes]
rs7774832	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9285468	0.88[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs9321256	0.91[EUR][1000 genomes]
rs9375786	0.87[CEU][hapmap];0.81[AMR][1000 genomes]
rs9388867	0.88[CEU][hapmap];0.95[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9388870	0.94[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9388871	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs9402298	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9402304	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9402305	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9492764	0.94[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs966825	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs977140	0.85[AMR][1000 genomes]
rs9885632	0.82[CEU][hapmap]
rs998228	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131234800-131254000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
4	chr6:131236400-131254000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:131242600-131254800	Weak transcription	Fetal Kidney	kidney
6	chr6:131242800-131255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:131244800-131255000	Weak transcription	Lung	lung
9	chr6:131245000-131254000	Weak transcription	Left Ventricle	heart
10	chr6:131245000-131254800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:131246200-131254200	Weak transcription	Fetal Intestine Large	intestine
12	chr6:131246200-131264800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:131246600-131254800	Weak transcription	Placenta	Placenta
14	chr6:131247800-131254200	Weak transcription	Fetal Intestine Small	intestine
15	chr6:131248800-131254200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:131248800-131255000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:131249000-131254200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:131249000-131254800	Weak transcription	HMEC	breast
19	chr6:131249000-131259000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:131249200-131254000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:131249200-131255000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:131249800-131255000	Weak transcription	Small Intestine	intestine
23	chr6:131250400-131254000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:131250800-131254000	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:131250800-131254000	Weak transcription	Ovary	ovary
26	chr6:131250800-131255000	Weak transcription	NH-A	brain
27	chr6:131250800-131255600	Weak transcription	Pancreas	Pancrea
28	chr6:131251000-131254800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:131251000-131255000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:131251200-131254000	Weak transcription	Colon Smooth Muscle	Colon
31	chr6:131251200-131254200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:131251200-131254200	Weak transcription	HSMM	muscle
33	chr6:131251200-131255000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:131251200-131268200	Weak transcription	Right Atrium	heart
35	chr6:131251400-131254000	Weak transcription	NHLF	lung
36	chr6:131251400-131254200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:131251400-131254400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr6:131251400-131254800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:131251800-131254800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr6:131251800-131256200	Weak transcription	Aorta	Aorta
41	chr6:131252200-131254200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:131252400-131254000	Weak transcription	Fetal Muscle Leg	muscle
43	chr6:131253000-131254200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:131253000-131254800	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr6:131253000-131272800	Weak transcription	Dnd41	blood
46	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
47	chr6:131253400-131254800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:131253400-131255000	Enhancers	Brain Substantia Nigra	brain
49	chr6:131253400-131256200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:131253600-131254200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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