Variant report

Variant	rs6569711
Chromosome Location	chr6:131195083-131195084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10782244	0.86[EUR][1000 genomes]
rs13217139	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1334689	0.89[EUR][1000 genomes]
rs1413753	0.81[EUR][1000 genomes]
rs1571911	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1582055	0.86[EUR][1000 genomes]
rs1999474	0.90[EUR][1000 genomes]
rs2008598	0.83[EUR][1000 genomes]
rs2027117	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2039509	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2039830	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2183969	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2184408	0.87[EUR][1000 genomes]
rs2839942	0.91[EUR][1000 genomes]
rs3777446	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4075265	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4895897	0.86[EUR][1000 genomes]
rs4895898	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4897475	0.90[EUR][1000 genomes]
rs6536	0.86[EUR][1000 genomes]
rs6569706	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6569709	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6907284	0.86[EUR][1000 genomes]
rs6908154	0.82[EUR][1000 genomes]
rs6908659	0.82[EUR][1000 genomes]
rs6921455	0.83[EUR][1000 genomes]
rs6938309	0.91[EUR][1000 genomes]
rs6938735	0.89[EUR][1000 genomes]
rs761835	0.86[EUR][1000 genomes]
rs7738572	0.91[EUR][1000 genomes]
rs7741462	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7748468	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7754351	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7763473	0.83[EUR][1000 genomes]
rs7766004	0.90[EUR][1000 genomes]
rs7766505	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7768048	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7769310	0.91[EUR][1000 genomes]
rs7773093	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7774832	0.91[EUR][1000 genomes]
rs9285468	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9321256	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9375777	0.88[EUR][1000 genomes]
rs9375786	0.81[AFR][1000 genomes]
rs9388858	0.82[EUR][1000 genomes]
rs9388867	0.94[EUR][1000 genomes]
rs9388870	0.82[EUR][1000 genomes]
rs9388871	0.81[AFR][1000 genomes]
rs9402298	0.90[EUR][1000 genomes]
rs9492764	0.82[EUR][1000 genomes]
rs998228	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
2	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:131158200-131214400	Weak transcription	Lung	lung
4	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
5	chr6:131168800-131214600	Weak transcription	Fetal Kidney	kidney
6	chr6:131170400-131217400	Weak transcription	Psoas Muscle	Psoas
7	chr6:131170600-131213800	Weak transcription	GM12878-XiMat	blood
8	chr6:131171200-131209600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:131171200-131223200	Weak transcription	Right Ventricle	heart
10	chr6:131171400-131220200	Weak transcription	Fetal Brain Male	brain
11	chr6:131173000-131207000	Weak transcription	Brain Substantia Nigra	brain
12	chr6:131175000-131222400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:131175200-131214000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:131175400-131203600	Weak transcription	A549	lung
15	chr6:131175400-131211200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:131175600-131205400	Weak transcription	NH-A	brain
17	chr6:131175600-131221600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:131177200-131209200	Weak transcription	HUVEC	blood vessel
19	chr6:131179200-131214000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:131179400-131222400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:131179600-131210600	Weak transcription	NHEK	skin
22	chr6:131179600-131215000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:131180000-131203200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:131181400-131214400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:131184800-131200800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:131185800-131214400	Weak transcription	Thymus	Thymus
27	chr6:131187000-131203200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:131187000-131207000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:131187000-131214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:131187000-131223200	Weak transcription	Gastric	stomach
31	chr6:131187200-131216400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr6:131187400-131208600	Weak transcription	Brain Hippocampus Middle	brain
33	chr6:131187600-131203400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr6:131188200-131216400	Weak transcription	HSMMtube	muscle
35	chr6:131188600-131197800	Weak transcription	HSMM	muscle
36	chr6:131188600-131203200	Weak transcription	NHDF-Ad	bronchial
37	chr6:131188800-131203600	Weak transcription	Placenta	Placenta
38	chr6:131188800-131208800	Weak transcription	Primary B cells from cord blood	blood
39	chr6:131190400-131210600	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr6:131190400-131227000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:131190800-131195200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr6:131190800-131210800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr6:131190800-131224200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:131191000-131201200	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:131191000-131203600	Weak transcription	Fetal Intestine Large	intestine
46	chr6:131191000-131234400	Weak transcription	Esophagus	oesophagus
47	chr6:131191200-131201000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr6:131191200-131202600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr6:131191200-131203200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr6:131191200-131203400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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