Variant report

Variant	rs1334689
Chromosome Location	chr6:131234008-131234009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1006655	0.94[CEU][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10782244	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1114644	0.83[TSI][hapmap]
rs13217139	0.89[EUR][1000 genomes]
rs1571911	0.87[CEU][hapmap];0.80[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1571912	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs1582055	0.82[CEU][hapmap];0.84[AFR][1000 genomes]
rs1977578	0.82[CEU][hapmap]
rs1999474	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2008598	0.82[AFR][1000 genomes]
rs2027117	0.88[CEU][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs2039509	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2039830	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2105250	0.93[CEU][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2183969	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2184408	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2327005	0.82[CEU][hapmap]
rs2839942	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3777446	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4895897	0.82[CEU][hapmap];0.84[AFR][1000 genomes]
rs4895898	0.88[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4897475	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6536	1.00[ASW][hapmap];0.84[CEU][hapmap];0.87[GIH][hapmap];0.94[LWK][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.86[AFR][1000 genomes]
rs6569709	1.00[ASW][hapmap];0.94[CEU][hapmap];0.95[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6569711	0.89[EUR][1000 genomes]
rs6907284	0.89[CEU][hapmap];0.88[GIH][hapmap];0.89[TSI][hapmap]
rs6920493	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6921455	0.82[AFR][1000 genomes]
rs6935267	0.82[ASW][hapmap];0.94[LWK][hapmap];0.84[AFR][1000 genomes]
rs6938309	0.94[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6938735	0.82[AFR][1000 genomes]
rs761835	0.84[CEU][hapmap];0.86[AFR][1000 genomes]
rs7738572	0.94[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7741462	0.87[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7748468	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7754351	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7756269	0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7761655	0.94[CEU][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7763473	0.82[AFR][1000 genomes]
rs7766004	0.94[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7766505	1.00[CEU][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7768048	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.80[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7769310	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7773093	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7774832	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9285468	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9321256	0.92[EUR][1000 genomes]
rs9375777	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9375786	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9388867	1.00[ASW][hapmap];0.94[CEU][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9388870	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9388871	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9402298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9402304	0.94[CEU][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9402305	0.94[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9483192	0.92[YRI][hapmap]
rs9483203	0.82[CEU][hapmap]
rs9492764	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs966825	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs977140	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9885632	0.88[CEU][hapmap]
rs988749	0.81[AFR][1000 genomes]
rs998228	0.88[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131191000-131234400	Weak transcription	Esophagus	oesophagus
2	chr6:131203600-131234200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:131211400-131234200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:131215200-131234200	Weak transcription	Thymus	Thymus
5	chr6:131215400-131238200	Weak transcription	Aorta	Aorta
6	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:131222200-131234200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:131222200-131234400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:131222200-131236400	Weak transcription	Fetal Lung	lung
10	chr6:131222200-131248400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
12	chr6:131222400-131238200	Weak transcription	Dnd41	blood
13	chr6:131222400-131248600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:131222600-131241200	Weak transcription	A549	lung
15	chr6:131224400-131241600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:131228800-131245800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:131229400-131234200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:131229400-131234400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:131229400-131245200	Weak transcription	Adipose Nuclei	Adipose
20	chr6:131229600-131234400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:131229600-131234400	Weak transcription	Small Intestine	intestine
22	chr6:131229600-131245400	Weak transcription	NHLF	lung
23	chr6:131229600-131248600	Weak transcription	Stomach Mucosa	stomach
24	chr6:131229600-131249600	Weak transcription	Osteobl	bone
25	chr6:131229800-131242400	Weak transcription	HepG2	liver
26	chr6:131230600-131236400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:131233000-131234200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:131233000-131234400	Enhancers	Brain Angular Gyrus	brain
29	chr6:131233000-131234600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:131233000-131234600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:131233000-131234600	Enhancers	Brain Anterior Caudate	brain
32	chr6:131233000-131234600	Enhancers	Brain Hippocampus Middle	brain
33	chr6:131233000-131234600	Enhancers	Brain Substantia Nigra	brain
34	chr6:131233000-131234600	Enhancers	Left Ventricle	heart
35	chr6:131233000-131234800	Enhancers	Brain Cingulate Gyrus	brain
36	chr6:131233000-131234800	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr6:131233000-131234800	Enhancers	HSMM	muscle
38	chr6:131233000-131235800	Enhancers	Fetal Muscle Leg	muscle
39	chr6:131233600-131235200	Enhancers	HSMMtube	muscle
40	chr6:131233800-131234200	Weak transcription	Lung	lung
41	chr6:131233800-131234400	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr6:131233800-131234600	Enhancers	Pancreas	Pancrea
43	chr6:131233800-131234800	Enhancers	GM12878-XiMat	blood
44	chr6:131233800-131241400	Weak transcription	Fetal Muscle Trunk	muscle
45	chr6:131234000-131234400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:131234000-131234600	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr6:131234000-131234800	Enhancers	Primary B cells from peripheral blood	blood
48	chr6:131234000-131234800	Enhancers	Primary T cells from cord blood	blood
49	chr6:131234000-131234800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:131234000-131234800	Enhancers	Fetal Thymus	thymus

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