Variant report

Variant	rs977140
Chromosome Location	chr6:131282095-131282096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1006655	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10782244	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1334689	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1571911	0.84[AFR][1000 genomes]
rs1571912	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1999474	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2039830	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2105250	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2184408	0.82[AFR][1000 genomes]
rs4895898	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4897475	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6536	0.84[AFR][1000 genomes]
rs6569709	0.84[AFR][1000 genomes]
rs6920493	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6935267	0.82[AFR][1000 genomes]
rs6938309	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6938735	0.80[AFR][1000 genomes]
rs761835	0.84[AFR][1000 genomes]
rs7738572	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7741462	0.91[AFR][1000 genomes]
rs7748468	0.81[AMR][1000 genomes]
rs7756269	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7761655	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7766004	0.85[AMR][1000 genomes]
rs7766505	0.81[EUR][1000 genomes]
rs7768048	0.91[AFR][1000 genomes]
rs7769310	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7774832	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9285468	0.84[AFR][1000 genomes]
rs9375786	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9388867	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9388870	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9388871	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9402298	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9402304	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9402305	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9492764	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs966825	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs998228	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:131255400-131288800	Weak transcription	Fetal Kidney	kidney
3	chr6:131260000-131286200	Weak transcription	HSMMtube	muscle
4	chr6:131266000-131283800	Weak transcription	Lung	lung
5	chr6:131266000-131287600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:131266800-131287200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:131267000-131286000	Weak transcription	Brain Angular Gyrus	brain
8	chr6:131267000-131294800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:131267200-131282200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:131267400-131286000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:131267400-131287200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:131267600-131284000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:131267600-131287200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:131267800-131286000	Weak transcription	NHDF-Ad	bronchial
15	chr6:131267800-131288200	Weak transcription	NH-A	brain
16	chr6:131268400-131287200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:131269000-131290400	Weak transcription	Right Ventricle	heart
18	chr6:131269400-131286000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:131272200-131301000	Weak transcription	Placenta	Placenta
20	chr6:131272800-131289000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:131274400-131289000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:131275800-131287800	Weak transcription	Fetal Stomach	stomach
23	chr6:131276200-131286000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:131276400-131283000	Weak transcription	Adipose Nuclei	Adipose
25	chr6:131276400-131284000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:131276400-131286800	Weak transcription	Aorta	Aorta
27	chr6:131276400-131288800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:131277000-131286000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:131277000-131288600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:131277400-131290000	Weak transcription	Fetal Intestine Small	intestine
31	chr6:131277600-131283800	Weak transcription	Psoas Muscle	Psoas
32	chr6:131277600-131284000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:131277600-131284000	Weak transcription	Left Ventricle	heart
34	chr6:131277600-131286400	Weak transcription	NHLF	lung
35	chr6:131277600-131287800	Weak transcription	Fetal Muscle Leg	muscle
36	chr6:131277600-131288800	Weak transcription	Fetal Muscle Trunk	muscle
37	chr6:131277800-131287800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:131279000-131282200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:131280000-131282600	Enhancers	Fetal Lung	lung
40	chr6:131280000-131288200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:131280200-131286000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:131280200-131286200	Weak transcription	Osteobl	bone
43	chr6:131280400-131285800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:131280400-131286200	Weak transcription	HSMM	muscle
45	chr6:131281400-131282400	Weak transcription	Brain Germinal Matrix	brain
46	chr6:131281400-131282400	Weak transcription	Brain Hippocampus Middle	brain
47	chr6:131281400-131286000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:131281400-131287200	Weak transcription	Ovary	ovary
49	chr6:131281800-131282200	Weak transcription	GM12878-XiMat	blood
50	chr6:131281800-131282400	Enhancers	Colon Smooth Muscle	Colon

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