Variant report

Variant	rs966825
Chromosome Location	chr6:131286215-131286216
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131285017..131288807-chr6:131289178..131292280,3	K562	blood:

Variant related genes	Relation type
ENSG00000079819	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1006655	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10782244	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1334689	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1571911	0.84[AFR][1000 genomes]
rs1571912	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1977578	0.81[EUR][1000 genomes]
rs1999474	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2039830	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2105250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2184408	0.82[AFR][1000 genomes]
rs2327005	0.81[EUR][1000 genomes]
rs3777446	0.83[AMR][1000 genomes]
rs4895898	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4897475	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6536	0.84[AFR][1000 genomes]
rs6569709	0.84[AFR][1000 genomes]
rs6920493	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932317	0.81[EUR][1000 genomes]
rs6935267	0.82[AFR][1000 genomes]
rs6938309	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6938735	0.80[AFR][1000 genomes]
rs761835	0.84[AFR][1000 genomes]
rs7738572	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7741462	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7748468	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7756269	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7761655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766004	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7766505	0.83[EUR][1000 genomes]
rs7768048	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7769310	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7774832	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9285468	0.84[AFR][1000 genomes]
rs9375786	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9388867	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9388870	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9388871	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9402298	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9402304	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9402305	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9402307	0.81[EUR][1000 genomes]
rs9483203	0.81[EUR][1000 genomes]
rs9492764	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs977140	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs998228	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:131255400-131288800	Weak transcription	Fetal Kidney	kidney
3	chr6:131266000-131287600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:131266800-131287200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:131267000-131294800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:131267400-131287200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:131267600-131287200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:131267800-131288200	Weak transcription	NH-A	brain
9	chr6:131268400-131287200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:131269000-131290400	Weak transcription	Right Ventricle	heart
11	chr6:131272200-131301000	Weak transcription	Placenta	Placenta
12	chr6:131272800-131289000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:131274400-131289000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:131275800-131287800	Weak transcription	Fetal Stomach	stomach
15	chr6:131276400-131286800	Weak transcription	Aorta	Aorta
16	chr6:131276400-131288800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:131277000-131288600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:131277400-131290000	Weak transcription	Fetal Intestine Small	intestine
19	chr6:131277600-131286400	Weak transcription	NHLF	lung
20	chr6:131277600-131287800	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:131277600-131288800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:131277800-131287800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:131280000-131288200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:131281400-131287200	Weak transcription	Ovary	ovary
25	chr6:131281800-131288000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:131282000-131287000	Weak transcription	HepG2	liver
27	chr6:131282000-131287600	Weak transcription	Brain Substantia Nigra	brain
28	chr6:131282600-131288000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:131283800-131287000	Enhancers	Primary B cells from peripheral blood	blood
30	chr6:131284200-131287400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr6:131284400-131287000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:131284400-131287400	Weak transcription	Lung	lung
33	chr6:131284400-131287800	Weak transcription	Right Atrium	heart
34	chr6:131284400-131288400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:131284400-131288600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:131284400-131289200	Weak transcription	Left Ventricle	heart
37	chr6:131285400-131288200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:131285400-131288400	Enhancers	Fetal Lung	lung
39	chr6:131285600-131288000	Weak transcription	Colon Smooth Muscle	Colon
40	chr6:131285800-131287600	Enhancers	Muscle Satellite Cultured Cells	--
41	chr6:131286000-131286400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:131286000-131286400	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr6:131286000-131286400	Enhancers	Brain Angular Gyrus	brain
44	chr6:131286000-131286400	Enhancers	Brain Hippocampus Middle	brain
45	chr6:131286000-131286400	Enhancers	Small Intestine	intestine
46	chr6:131286000-131286600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:131286000-131286600	Enhancers	Brain Anterior Caudate	brain
48	chr6:131286000-131286600	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr6:131286000-131286600	Enhancers	NHDF-Ad	bronchial
50	chr6:131286000-131288400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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