Variant report

Variant	rs6935267
Chromosome Location	chr6:131163098-131163099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1006655	0.86[YRI][hapmap]
rs10782244	0.84[AFR][1000 genomes]
rs1334689	0.82[ASW][hapmap];0.94[LWK][hapmap];0.84[AFR][1000 genomes]
rs1571911	0.83[YRI][hapmap];0.95[AFR][1000 genomes]
rs1582055	0.86[YRI][hapmap];0.89[AFR][1000 genomes]
rs1999474	0.84[AFR][1000 genomes]
rs2008598	0.86[YRI][hapmap];0.91[AFR][1000 genomes]
rs2039830	0.82[ASW][hapmap];0.94[LWK][hapmap];0.84[AFR][1000 genomes]
rs2105250	0.82[AFR][1000 genomes]
rs2184408	0.92[YRI][hapmap];0.96[AFR][1000 genomes]
rs4895897	0.86[YRI][hapmap];0.89[AFR][1000 genomes]
rs4895898	0.84[AFR][1000 genomes]
rs4897475	0.84[AFR][1000 genomes]
rs6536	0.82[ASW][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs6569709	0.82[ASW][hapmap];1.00[LWK][hapmap];0.86[YRI][hapmap];0.95[AFR][1000 genomes]
rs6921455	0.91[AFR][1000 genomes]
rs6938309	0.84[AFR][1000 genomes]
rs6938735	0.91[AFR][1000 genomes]
rs761835	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs7738572	0.84[AFR][1000 genomes]
rs7741462	0.87[AFR][1000 genomes]
rs7761655	0.82[AFR][1000 genomes]
rs7763473	0.91[AFR][1000 genomes]
rs7768048	0.82[ASW][hapmap];0.89[LWK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs7769310	0.84[AFR][1000 genomes]
rs7774832	0.84[AFR][1000 genomes]
rs9285468	0.82[ASW][hapmap];1.00[LWK][hapmap];0.86[YRI][hapmap];0.95[AFR][1000 genomes]
rs9375777	0.89[AFR][1000 genomes]
rs9388867	0.82[ASW][hapmap];0.94[LWK][hapmap];0.84[AFR][1000 genomes]
rs9388870	0.81[AFR][1000 genomes]
rs9402298	0.84[AFR][1000 genomes]
rs9492764	0.82[ASW][hapmap];0.94[LWK][hapmap];0.81[AFR][1000 genomes]
rs966825	0.82[AFR][1000 genomes]
rs977140	0.82[AFR][1000 genomes]
rs988749	0.93[AFR][1000 genomes]
rs998228	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131132000-131173800	Weak transcription	HSMMtube	muscle
2	chr6:131136400-131174400	Weak transcription	Left Ventricle	heart
3	chr6:131149000-131172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
5	chr6:131150600-131183400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:131152800-131168000	Weak transcription	Fetal Kidney	kidney
8	chr6:131154000-131173800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:131155000-131174600	Weak transcription	Aorta	Aorta
10	chr6:131157600-131170200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:131157800-131163400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:131157800-131168200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:131157800-131170200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:131158000-131172200	Weak transcription	Brain Anterior Caudate	brain
15	chr6:131158200-131173800	Weak transcription	NH-A	brain
16	chr6:131158200-131179400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:131158200-131190600	Weak transcription	Spleen	Spleen
18	chr6:131158200-131214400	Weak transcription	Lung	lung
19	chr6:131158400-131168200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr6:131158600-131174400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:131159000-131174600	Weak transcription	Placenta	Placenta
22	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
23	chr6:131159600-131163400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr6:131159600-131174400	Weak transcription	A549	lung
25	chr6:131159800-131163800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:131160200-131167600	Weak transcription	NHDF-Ad	bronchial
27	chr6:131160400-131164200	Weak transcription	Brain Angular Gyrus	brain
28	chr6:131160600-131167000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:131160600-131179200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:131161000-131165200	Enhancers	Liver	Liver
31	chr6:131161000-131186600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:131161200-131168000	Weak transcription	Primary B cells from cord blood	blood
33	chr6:131161200-131168600	Weak transcription	NHLF	lung
34	chr6:131161200-131174400	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:131161200-131174400	Weak transcription	Fetal Intestine Small	intestine
36	chr6:131161400-131172000	Weak transcription	Brain Substantia Nigra	brain
37	chr6:131161400-131172200	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:131161600-131176800	Weak transcription	Dnd41	blood
39	chr6:131161800-131186400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:131162200-131163600	Enhancers	H9 Cell Line	embryonic stem cell
41	chr6:131162200-131163800	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr6:131162200-131164800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:131162400-131163200	Strong transcription	Fetal Lung	lung
44	chr6:131162400-131163800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:131162600-131164800	Weak transcription	Adipose Nuclei	Adipose
46	chr6:131162800-131163600	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr6:131162800-131163600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr6:131162800-131165400	Weak transcription	Fetal Stomach	stomach
49	chr6:131162800-131166600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:131162800-131168200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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