Variant report

Variant	rs9388870
Chromosome Location	chr6:131267032-131267033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131256677..131258531-chr6:131266868..131268391,2	K562	blood:
2	chr6:131265482..131267662-chr6:131299441..131302281,2	K562	blood:

Variant related genes	Relation type
ENSG00000079819	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1006655	0.94[CEU][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10782244	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13217139	0.82[EUR][1000 genomes]
rs1334689	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1571911	0.88[CEU][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1571912	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1582055	0.84[CEU][hapmap];0.80[AFR][1000 genomes]
rs1977578	0.82[CEU][hapmap]
rs1999474	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2027117	0.88[CEU][hapmap]
rs2039509	0.90[CEU][hapmap]
rs2039830	0.88[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2105250	0.93[CEU][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2183969	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2184408	0.81[CEU][hapmap];0.84[AFR][1000 genomes]
rs2327005	0.82[CEU][hapmap]
rs3777446	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4895897	0.84[CEU][hapmap];0.80[AFR][1000 genomes]
rs4895898	0.89[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4897475	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6536	0.84[CEU][hapmap];0.82[AFR][1000 genomes]
rs6569709	0.94[CEU][hapmap];0.86[AFR][1000 genomes]
rs6569711	0.82[EUR][1000 genomes]
rs6907284	0.89[CEU][hapmap]
rs6920493	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6935267	0.81[AFR][1000 genomes]
rs6938309	0.94[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs761835	0.85[CEU][hapmap];0.82[AFR][1000 genomes]
rs7738572	0.94[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7741462	0.88[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7748468	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7754351	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs7756269	0.90[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7761655	0.94[CEU][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7766004	0.94[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7766505	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7768048	0.88[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7769310	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7773093	0.84[EUR][1000 genomes]
rs7774832	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9285468	0.94[CEU][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9321256	0.85[EUR][1000 genomes]
rs9375777	0.80[AFR][1000 genomes]
rs9375786	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9388867	0.94[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9388871	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9402298	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9402304	0.94[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9402305	0.94[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9402307	0.81[CEU][hapmap]
rs9483192	0.93[YRI][hapmap]
rs9483203	0.83[CEU][hapmap]
rs9492764	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs966825	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs977140	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9885632	0.88[CEU][hapmap]
rs998228	0.89[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:131251200-131268200	Weak transcription	Right Atrium	heart
4	chr6:131253000-131272800	Weak transcription	Dnd41	blood
5	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
6	chr6:131255000-131274600	Weak transcription	Fetal Stomach	stomach
7	chr6:131255200-131276000	Weak transcription	Left Ventricle	heart
8	chr6:131255400-131276200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:131255400-131288800	Weak transcription	Fetal Kidney	kidney
10	chr6:131255800-131276200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:131255800-131277400	Weak transcription	Psoas Muscle	Psoas
12	chr6:131256000-131279400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:131257200-131270200	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:131257400-131281800	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:131259800-131268200	Weak transcription	HSMM	muscle
16	chr6:131260000-131286200	Weak transcription	HSMMtube	muscle
17	chr6:131263600-131272800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:131264400-131267200	Enhancers	Fetal Intestine Small	intestine
19	chr6:131264400-131267200	Enhancers	Stomach Mucosa	stomach
20	chr6:131264400-131269200	Enhancers	HepG2	liver
21	chr6:131264600-131267200	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr6:131264600-131267200	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr6:131264600-131267400	Enhancers	Brain Hippocampus Middle	brain
24	chr6:131264600-131267600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:131264600-131267800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:131264600-131268200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:131264800-131267400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr6:131264800-131267600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:131264800-131267600	Enhancers	Fetal Lung	lung
30	chr6:131264800-131277800	Weak transcription	Gastric	stomach
31	chr6:131265000-131267200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:131265000-131267400	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr6:131265000-131267800	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr6:131265000-131269000	Enhancers	NHLF	lung
35	chr6:131265200-131267200	Enhancers	Small Intestine	intestine
36	chr6:131265400-131267600	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr6:131265600-131267200	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr6:131265600-131267400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:131265600-131267600	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr6:131265600-131267600	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr6:131265600-131276000	Weak transcription	Duodenum Mucosa	Duodenum
42	chr6:131265800-131267200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr6:131265800-131267400	Enhancers	HMEC	breast
44	chr6:131265800-131274400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:131266000-131267400	Enhancers	Brain Anterior Caudate	brain
46	chr6:131266000-131267800	Enhancers	NHDF-Ad	bronchial
47	chr6:131266000-131268200	Weak transcription	Adipose Nuclei	Adipose
48	chr6:131266000-131269400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:131266000-131272600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:131266000-131275000	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links