Variant report

Variant	rs6907284
Chromosome Location	chr6:131183519-131183520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131176859..131178684-chr6:131181989..131183637,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1006655	0.83[CEU][hapmap]
rs1114644	0.84[CEU][hapmap]
rs13217139	0.87[EUR][1000 genomes]
rs1334689	0.89[CEU][hapmap];0.88[GIH][hapmap];0.89[TSI][hapmap]
rs1571911	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs1582055	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs1999474	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs2008598	0.89[CEU][hapmap]
rs2027117	1.00[ASW][hapmap];0.89[CEU][hapmap];0.88[GIH][hapmap];0.90[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs2039509	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs2039830	0.89[CEU][hapmap];0.88[GIH][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs2105250	0.82[CEU][hapmap]
rs2183969	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs2184408	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs2327005	1.00[ASW][hapmap];0.90[MKK][hapmap]
rs3777446	0.84[EUR][1000 genomes]
rs4075265	0.89[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4895897	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs4895898	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs4897475	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs6536	0.94[CEU][hapmap];0.92[GIH][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs6569706	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6569709	0.94[CEU][hapmap];0.84[GIH][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs6569711	0.86[EUR][1000 genomes]
rs6938309	0.83[CEU][hapmap]
rs6938735	0.86[EUR][1000 genomes]
rs761835	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs7738572	0.83[CEU][hapmap]
rs7741462	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs7748468	0.83[CEU][hapmap]
rs7754351	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs7761655	0.83[CEU][hapmap]
rs7766004	0.83[CEU][hapmap];0.88[GIH][hapmap];0.89[TSI][hapmap]
rs7766505	1.00[ASW][hapmap];0.89[CEU][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs7768048	0.89[CEU][hapmap];0.88[GIH][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs7773093	0.85[EUR][1000 genomes]
rs9285468	0.94[CEU][hapmap];0.88[GIH][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs9321256	0.87[EUR][1000 genomes]
rs9375777	0.87[EUR][1000 genomes]
rs9375786	0.83[CEU][hapmap]
rs9388867	0.94[CEU][hapmap];0.84[GIH][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs9388870	0.89[CEU][hapmap]
rs9388871	0.89[CEU][hapmap]
rs9402298	0.80[EUR][1000 genomes]
rs9402304	0.83[CEU][hapmap]
rs9402305	0.82[CEU][hapmap]
rs9492764	0.89[CEU][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap]
rs998228	0.89[CEU][hapmap];0.85[EUR][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
2	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:131158200-131190600	Weak transcription	Spleen	Spleen
4	chr6:131158200-131214400	Weak transcription	Lung	lung
5	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
6	chr6:131161000-131186600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:131161800-131186400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:131168400-131190600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:131168800-131214600	Weak transcription	Fetal Kidney	kidney
10	chr6:131170000-131189000	Strong transcription	Adipose Nuclei	Adipose
11	chr6:131170400-131193000	Weak transcription	Fetal Thymus	thymus
12	chr6:131170400-131217400	Weak transcription	Psoas Muscle	Psoas
13	chr6:131170600-131184600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:131170600-131187000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:131170600-131190400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:131170600-131192600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:131170600-131193000	Weak transcription	Primary T cells from cord blood	blood
18	chr6:131170600-131213800	Weak transcription	GM12878-XiMat	blood
19	chr6:131170800-131189000	Strong transcription	Fetal Muscle Trunk	muscle
20	chr6:131171200-131209600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:131171200-131223200	Weak transcription	Right Ventricle	heart
22	chr6:131171400-131220200	Weak transcription	Fetal Brain Male	brain
23	chr6:131172600-131185600	Weak transcription	Gastric	stomach
24	chr6:131172600-131186600	Weak transcription	Brain Angular Gyrus	brain
25	chr6:131172800-131189400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr6:131173000-131207000	Weak transcription	Brain Substantia Nigra	brain
27	chr6:131173200-131185200	Weak transcription	Thymus	Thymus
28	chr6:131173400-131190800	Weak transcription	Esophagus	oesophagus
29	chr6:131174400-131185600	Weak transcription	Primary B cells from cord blood	blood
30	chr6:131175000-131185400	Weak transcription	Aorta	Aorta
31	chr6:131175000-131222400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:131175200-131190600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:131175200-131190600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:131175200-131214000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:131175400-131183600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr6:131175400-131185400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:131175400-131188000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:131175400-131194200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr6:131175400-131203600	Weak transcription	A549	lung
40	chr6:131175400-131211200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:131175600-131185600	Weak transcription	HSMMtube	muscle
42	chr6:131175600-131188200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:131175600-131190400	Weak transcription	Colon Smooth Muscle	Colon
44	chr6:131175600-131190600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:131175600-131205400	Weak transcription	NH-A	brain
46	chr6:131175600-131221600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr6:131175800-131184400	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr6:131176200-131184400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:131176200-131190800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr6:131176800-131188400	Strong transcription	Fetal Lung	lung

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