Variant report

Variant	rs9402305
Chromosome Location	chr6:131293718-131293719
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NRF1	chr6:131293661-131293790	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:131293556..131298037-chr6:131298805..131301642,4	K562	blood:
2	chr6:131288021..131290598-chr6:131292488..131295330,3	K562	blood:
3	chr6:131287420..131290006-chr6:131292145..131295330,3	K562	blood:

Variant related genes	Relation type
EPB41L2	TF binding region
ENSG00000079819	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1006655	1.00[CEU][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10782244	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1334689	0.94[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1412540	0.87[CEU][hapmap]
rs1571911	0.81[CEU][hapmap];0.80[AFR][1000 genomes]
rs1571912	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1977578	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs1984054	0.80[CEU][hapmap]
rs1999474	0.94[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2027117	0.81[CEU][hapmap]
rs2039509	0.84[CEU][hapmap]
rs2039830	0.81[CEU][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2105250	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2183969	0.83[CEU][hapmap]
rs2327005	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs3777446	0.83[AMR][1000 genomes]
rs4895898	0.83[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4897475	0.94[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6536	0.82[CEU][hapmap]
rs6569709	0.88[CEU][hapmap];0.80[AFR][1000 genomes]
rs6907284	0.82[CEU][hapmap]
rs6920493	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932317	0.81[EUR][1000 genomes]
rs6938309	0.88[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs761835	0.84[CEU][hapmap];0.82[YRI][hapmap]
rs7738572	0.88[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7741462	0.83[CEU][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7746714	0.87[CEU][hapmap]
rs7748468	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7754351	0.83[CEU][hapmap]
rs7756269	0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7761655	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766004	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7766505	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs7768048	0.81[CEU][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7769310	0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7774832	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9285468	0.88[CEU][hapmap];0.80[AFR][1000 genomes]
rs9375786	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9388867	0.88[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9388870	0.94[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9388871	0.94[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9402298	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9402304	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9402307	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs9483192	0.87[YRI][hapmap]
rs9483203	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs9492764	0.94[CEU][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs966825	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs977140	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9885632	0.88[CEU][hapmap]
rs998228	0.83[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:131267000-131294800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:131272200-131301000	Weak transcription	Placenta	Placenta
4	chr6:131288200-131306600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:131289000-131294800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:131289200-131294800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:131289200-131294800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:131289400-131296400	Weak transcription	HUVEC	blood vessel
9	chr6:131289600-131298200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:131289600-131300800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:131289800-131294400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:131289800-131294800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:131289800-131298000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:131290200-131294800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:131291200-131294800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:131291600-131298000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:131291600-131299200	Weak transcription	Pancreas	Pancrea
18	chr6:131291600-131299400	Weak transcription	Right Atrium	heart
19	chr6:131291800-131294800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:131291800-131306200	Weak transcription	Fetal Intestine Small	intestine
21	chr6:131292000-131295000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:131292000-131299400	Weak transcription	Brain Anterior Caudate	brain
23	chr6:131292200-131298200	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:131292400-131296200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:131292400-131296400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:131292400-131298400	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:131292400-131299600	Weak transcription	Fetal Stomach	stomach
28	chr6:131292400-131299800	Weak transcription	Left Ventricle	heart
29	chr6:131292400-131306400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:131292600-131294800	Weak transcription	K562	blood
31	chr6:131292600-131296400	Weak transcription	NHDF-Ad	bronchial
32	chr6:131292600-131299400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:131292800-131295000	Weak transcription	HepG2	liver
34	chr6:131292800-131296000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr6:131292800-131296000	Weak transcription	HSMM	muscle
36	chr6:131292800-131299200	Weak transcription	Fetal Lung	lung
37	chr6:131292800-131299400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:131292800-131302000	Weak transcription	NHLF	lung

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