Variant report

Variant	rs6920493
Chromosome Location	chr6:131290901-131290902
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1006655	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10782244	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1334689	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1571912	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1977578	0.81[EUR][1000 genomes]
rs1999474	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2039830	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2105250	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2327005	0.81[EUR][1000 genomes]
rs3777446	0.83[AMR][1000 genomes]
rs4895898	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4897475	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6932317	0.81[EUR][1000 genomes]
rs6938309	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7738572	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7741462	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7748468	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7756269	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7761655	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766004	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7766505	0.83[EUR][1000 genomes]
rs7768048	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7769310	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7774832	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9375786	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9388867	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9388870	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9388871	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9402298	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9402304	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9402305	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9402307	0.81[EUR][1000 genomes]
rs9483203	0.81[EUR][1000 genomes]
rs9492764	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs966825	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs977140	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs998228	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:131267000-131294800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:131272200-131301000	Weak transcription	Placenta	Placenta
4	chr6:131286200-131293600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:131286800-131291600	Active TSS	Aorta	Aorta
6	chr6:131287600-131291800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
7	chr6:131288200-131291600	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr6:131288200-131306600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:131288400-131291800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:131288600-131292200	Weak transcription	K562	blood
11	chr6:131288800-131291400	Active TSS	Psoas Muscle	Psoas
12	chr6:131288800-131291600	Active TSS	Fetal Muscle Trunk	muscle
13	chr6:131288800-131291600	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr6:131288800-131291600	Active TSS	Stomach Smooth Muscle	stomach
15	chr6:131289000-131291400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:131289000-131292000	Flanking Active TSS	Osteobl	bone
17	chr6:131289000-131294800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:131289200-131291000	Weak transcription	Brain Substantia Nigra	brain
19	chr6:131289200-131291200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:131289200-131291200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr6:131289200-131291400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:131289200-131292200	Weak transcription	Fetal Thymus	thymus
23	chr6:131289200-131294800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:131289200-131294800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:131289400-131291000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:131289400-131291400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:131289400-131291600	Active TSS	Brain Hippocampus Middle	brain
28	chr6:131289400-131291600	Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr6:131289400-131291800	Active TSS	NHLF	lung
30	chr6:131289400-131296400	Weak transcription	HUVEC	blood vessel
31	chr6:131289600-131291600	Active TSS	Fetal Stomach	stomach
32	chr6:131289600-131291600	Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr6:131289600-131291800	Active TSS	Ovary	ovary
34	chr6:131289600-131298200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:131289600-131300800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr6:131289800-131291200	Weak transcription	NH-A	brain
37	chr6:131289800-131291400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr6:131289800-131291400	Active TSS	Fetal Muscle Leg	muscle
39	chr6:131289800-131291400	Active TSS	HSMM	muscle
40	chr6:131289800-131291600	Active TSS	Fetal Kidney	kidney
41	chr6:131289800-131291600	Active TSS	Right Atrium	heart
42	chr6:131289800-131291600	Active TSS	NHDF-Ad	bronchial
43	chr6:131289800-131294400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr6:131289800-131294800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:131289800-131298000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:131290000-131291200	Active TSS	Fetal Intestine Small	intestine
47	chr6:131290000-131291400	Active TSS	Rectal Smooth Muscle	rectum
48	chr6:131290200-131291200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr6:131290200-131291400	Enhancers	Brain Cingulate Gyrus	brain
50	chr6:131290200-131291400	ZNF genes & repeats	Fetal Brain Male	brain

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