Variant report

Variant	rs7738572
Chromosome Location	chr6:131248688-131248689
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1006655	0.89[CEU][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10782244	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13217139	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1334689	0.94[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1571911	0.94[CEU][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1571912	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1582055	0.89[CEU][hapmap];0.84[AFR][1000 genomes]
rs1999474	0.94[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2008598	0.84[CEU][hapmap];0.82[AFR][1000 genomes]
rs2027117	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs2039509	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs2039830	0.94[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2105250	0.86[CEU][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2183969	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2184408	0.81[CEU][hapmap];0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2839942	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3777446	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4075265	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs4895897	0.89[CEU][hapmap];0.84[AFR][1000 genomes]
rs4895898	0.94[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4897475	0.94[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6536	0.86[AFR][1000 genomes]
rs6569709	0.88[CEU][hapmap];0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6569711	0.91[EUR][1000 genomes]
rs6907284	0.83[CEU][hapmap]
rs6920493	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6921455	0.82[AFR][1000 genomes]
rs6935267	0.84[AFR][1000 genomes]
rs6938309	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6938735	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs761835	0.80[CEU][hapmap];0.86[AFR][1000 genomes]
rs7741462	0.94[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7748468	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7754351	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7756269	0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7761655	0.89[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7763473	0.82[AFR][1000 genomes]
rs7766004	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7766505	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7768048	0.94[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7769310	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773093	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7774832	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9285468	0.88[CEU][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9321256	0.92[EUR][1000 genomes]
rs9375777	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9375786	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9388867	0.88[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9388870	0.94[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9388871	0.94[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9402298	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9402304	0.89[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9402305	0.88[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9483192	0.93[YRI][hapmap]
rs9492764	0.94[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs966825	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs977140	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9885632	0.82[CEU][hapmap]
rs988749	0.81[AFR][1000 genomes]
rs998228	0.94[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
3	chr6:131229600-131249600	Weak transcription	Osteobl	bone
4	chr6:131234000-131250200	Weak transcription	Ovary	ovary
5	chr6:131234000-131250600	Weak transcription	Fetal Stomach	stomach
6	chr6:131234600-131249400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:131234600-131250200	Weak transcription	Pancreas	Pancrea
8	chr6:131234800-131254000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
10	chr6:131236400-131254000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:131238400-131248800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:131238400-131249800	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:131238400-131250200	Weak transcription	Aorta	Aorta
14	chr6:131239200-131252600	Weak transcription	Dnd41	blood
15	chr6:131240000-131253600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:131242200-131249600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:131242600-131254800	Weak transcription	Fetal Kidney	kidney
18	chr6:131242800-131255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:131244200-131249400	Weak transcription	NHDF-Ad	bronchial
20	chr6:131244200-131250000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr6:131244800-131249800	Weak transcription	HSMMtube	muscle
23	chr6:131244800-131255000	Weak transcription	Lung	lung
24	chr6:131245000-131249400	Weak transcription	Small Intestine	intestine
25	chr6:131245000-131249600	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:131245000-131254000	Weak transcription	Left Ventricle	heart
27	chr6:131245000-131254800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:131245400-131249600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:131245400-131249600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:131245400-131253600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:131246200-131249400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:131246200-131249800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:131246200-131252200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr6:131246200-131254200	Weak transcription	Fetal Intestine Large	intestine
35	chr6:131246200-131264800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr6:131246400-131249000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:131246600-131249800	Weak transcription	HUVEC	blood vessel
38	chr6:131246600-131254800	Weak transcription	Placenta	Placenta
39	chr6:131246800-131249000	Enhancers	Brain Anterior Caudate	brain
40	chr6:131246800-131251200	Enhancers	Brain Angular Gyrus	brain
41	chr6:131247000-131249600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr6:131247600-131249000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:131247600-131249000	Weak transcription	HSMM	muscle
44	chr6:131247600-131249200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr6:131247600-131249200	Enhancers	Brain Substantia Nigra	brain
46	chr6:131247600-131249400	Weak transcription	NHLF	lung
47	chr6:131247800-131254200	Weak transcription	Fetal Intestine Small	intestine
48	chr6:131248000-131249000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:131248000-131249000	Enhancers	HMEC	breast
50	chr6:131248200-131248800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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