Variant report

Variant	rs6536
Chromosome Location	chr6:131160876-131160877
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131160092..131161693-chr6:131166351..131169295,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1006655	0.86[YRI][hapmap]
rs10782244	0.86[AFR][1000 genomes]
rs1114644	0.89[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs13217139	0.87[EUR][1000 genomes]
rs1334689	1.00[ASW][hapmap];0.84[CEU][hapmap];0.87[GIH][hapmap];0.94[LWK][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.86[AFR][1000 genomes]
rs1413753	0.83[EUR][1000 genomes]
rs1571911	0.82[CEU][hapmap];0.83[YRI][hapmap];0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1582055	0.89[CEU][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1999474	0.84[CEU][hapmap];0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2008598	0.94[CEU][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2027117	0.84[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs2039509	0.84[CEU][hapmap];0.93[EUR][1000 genomes]
rs2039830	1.00[ASW][hapmap];0.84[CEU][hapmap];0.87[GIH][hapmap];0.94[LWK][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2105250	0.84[AFR][1000 genomes]
rs2183969	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs2184408	1.00[CEU][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3777446	0.84[EUR][1000 genomes]
rs4075265	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4895897	0.89[CEU][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4895898	0.84[CEU][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4897475	0.84[CEU][hapmap];0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6569706	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6569709	1.00[ASW][hapmap];0.89[CEU][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6569711	0.86[EUR][1000 genomes]
rs6907284	0.94[CEU][hapmap];0.92[GIH][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs6908154	0.84[EUR][1000 genomes]
rs6908659	0.85[EUR][1000 genomes]
rs6921455	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6933789	0.85[EUR][1000 genomes]
rs6935267	0.82[ASW][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs6938309	0.86[AFR][1000 genomes]
rs6938735	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs761835	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7738572	0.86[AFR][1000 genomes]
rs7741462	0.83[CEU][hapmap];0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7754351	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs7756269	0.81[AFR][1000 genomes]
rs7761655	0.84[AFR][1000 genomes]
rs7763473	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7764383	0.82[EUR][1000 genomes]
rs7766004	0.83[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap]
rs7766505	0.84[CEU][hapmap];0.94[TSI][hapmap];0.80[EUR][1000 genomes]
rs7768048	1.00[ASW][hapmap];0.84[CEU][hapmap];0.87[GIH][hapmap];0.89[LWK][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7769310	0.86[AFR][1000 genomes]
rs7773093	0.85[EUR][1000 genomes]
rs7774832	0.86[AFR][1000 genomes]
rs9285468	1.00[ASW][hapmap];0.89[CEU][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9321256	0.87[EUR][1000 genomes]
rs9375777	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9388858	0.85[EUR][1000 genomes]
rs9388867	1.00[ASW][hapmap];0.89[CEU][hapmap];0.83[GIH][hapmap];0.94[LWK][hapmap];0.97[TSI][hapmap];0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9388870	0.84[CEU][hapmap];0.82[AFR][1000 genomes]
rs9388871	0.84[CEU][hapmap]
rs9402298	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9402304	0.81[AFR][1000 genomes]
rs9402305	0.82[CEU][hapmap]
rs9492764	1.00[ASW][hapmap];0.84[CEU][hapmap];0.87[GIH][hapmap];0.94[LWK][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes]
rs955191	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs966825	0.84[AFR][1000 genomes]
rs977140	0.84[AFR][1000 genomes]
rs988749	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs998228	0.84[CEU][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131132000-131173800	Weak transcription	HSMMtube	muscle
2	chr6:131136400-131174400	Weak transcription	Left Ventricle	heart
3	chr6:131149000-131172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
5	chr6:131150400-131161400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:131150600-131183400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:131152400-131161800	Strong transcription	Fetal Intestine Large	intestine
9	chr6:131152800-131168000	Weak transcription	Fetal Kidney	kidney
10	chr6:131153600-131162400	Weak transcription	Fetal Lung	lung
11	chr6:131154000-131173800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:131155000-131174600	Weak transcription	Aorta	Aorta
13	chr6:131156200-131161000	Genic enhancers	Liver	Liver
14	chr6:131157600-131170200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:131157800-131161400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:131157800-131162400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:131157800-131163400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:131157800-131168200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:131157800-131170200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:131158000-131172200	Weak transcription	Brain Anterior Caudate	brain
21	chr6:131158200-131162200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr6:131158200-131163000	Strong transcription	HepG2	liver
23	chr6:131158200-131173800	Weak transcription	NH-A	brain
24	chr6:131158200-131179400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:131158200-131190600	Weak transcription	Spleen	Spleen
26	chr6:131158200-131214400	Weak transcription	Lung	lung
27	chr6:131158400-131163000	Strong transcription	Fetal Muscle Trunk	muscle
28	chr6:131158400-131168200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr6:131158600-131174400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:131159000-131162200	Weak transcription	Osteobl	bone
31	chr6:131159000-131174600	Weak transcription	Placenta	Placenta
32	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
33	chr6:131159200-131161400	Strong transcription	HSMM	muscle
34	chr6:131159400-131161200	Enhancers	Adipose Nuclei	Adipose
35	chr6:131159600-131161200	Strong transcription	NHLF	lung
36	chr6:131159600-131161400	Enhancers	Brain Hippocampus Middle	brain
37	chr6:131159600-131161600	Strong transcription	Fetal Stomach	stomach
38	chr6:131159600-131161600	Strong transcription	Dnd41	blood
39	chr6:131159600-131161800	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr6:131159600-131161800	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr6:131159600-131162800	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr6:131159600-131163400	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr6:131159600-131174400	Weak transcription	A549	lung
44	chr6:131159800-131163800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:131160000-131161000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:131160000-131161000	Enhancers	Brain Cingulate Gyrus	brain
47	chr6:131160000-131161200	Enhancers	Colon Smooth Muscle	Colon
48	chr6:131160000-131161400	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr6:131160200-131162000	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr6:131160200-131162200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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